6YTN image
Entry Detail
PDB ID:
6YTN
Keywords:
Title:
Magnesium chelatase H subunit (ChlH) E660W variant from Synechocystis sp.PCC6803
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2020-04-24
Release Date:
2020-12-09
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.23
R-Value Work:
0.19
Space Group:
H 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Mg-chelatase subunit ChlH
Chain IDs:A (auth: AAA), B (auth: BBB)
Chain Length:1351
Number of Molecules:2
Biological Source:Synechocystis sp. PCC 6803
Primary Citation
The active site of magnesium chelatase.
Nat.Plants 6 1491 1502 (2020)
PMID: 33257858 DOI: 10.1038/s41477-020-00806-9

Abstact

The insertion of magnesium into protoporphyrin initiates the biosynthesis of chlorophyll, the pigment that underpins photosynthesis. This reaction, catalysed by the magnesium chelatase complex, couples ATP hydrolysis by a ChlID motor complex to chelation within the ChlH subunit. We probed the structure and catalytic function of ChlH using a combination of X-ray crystallography, computational modelling, mutagenesis and enzymology. Two linked domains of ChlH in an initially open conformation of ChlH bind protoporphyrin IX, and the rearrangement of several loops envelops this substrate, forming an active site cavity. This induced fit brings an essential glutamate (E660), proposed to be the key catalytic residue for magnesium insertion, into proximity with the porphyrin. A buried solvent channel adjacent to E660 connects the exterior bulk solvent to the active site, forming a possible conduit for the delivery of magnesium or abstraction of protons.

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Primary Citation of related structures