6YT9 image
Deposition Date 2020-04-24
Release Date 2020-09-16
Last Version Date 2024-05-22
Entry Detail
PDB ID:
6YT9
Keywords:
Title:
Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit body
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:16S ribosomal RNA
Chain IDs:A (auth: 2), B (auth: 4)
Chain Length:1544
Number of Molecules:2
Biological Source:Acinetobacter baumannii
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S2
Gene (Uniprot):rpsB
Chain IDs:C (auth: c)
Chain Length:250
Number of Molecules:1
Biological Source:Acinetobacter baumannii
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S4
Gene (Uniprot):rpsD
Chain IDs:D (auth: e)
Chain Length:208
Number of Molecules:1
Biological Source:Acinetobacter baumannii
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S5
Gene (Uniprot):rpsE
Chain IDs:E (auth: f)
Chain Length:165
Number of Molecules:1
Biological Source:Acinetobacter baumannii
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S6
Gene (Uniprot):rpsF
Chain IDs:F (auth: g)
Chain Length:127
Number of Molecules:1
Biological Source:Acinetobacter baumannii
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S8
Gene (Uniprot):rpsH
Chain IDs:G (auth: i)
Chain Length:131
Number of Molecules:1
Biological Source:Acinetobacter baumannii
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S11
Gene (Uniprot):rpsK
Chain IDs:H (auth: l)
Chain Length:128
Number of Molecules:1
Biological Source:Acinetobacter baumannii
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S12
Gene (Uniprot):rpsL
Chain IDs:I (auth: m)
Chain Length:124
Number of Molecules:1
Biological Source:Acinetobacter baumannii
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S15
Gene (Uniprot):rpsO
Chain IDs:J (auth: p)
Chain Length:89
Number of Molecules:1
Biological Source:Acinetobacter baumannii
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S16
Gene (Uniprot):rpsP
Chain IDs:K (auth: q)
Chain Length:83
Number of Molecules:1
Biological Source:Acinetobacter baumannii
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S17
Gene (Uniprot):rpsQ
Chain IDs:L (auth: r)
Chain Length:85
Number of Molecules:1
Biological Source:Acinetobacter baumannii
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S18
Gene (Uniprot):rpsR
Chain IDs:M (auth: s)
Chain Length:75
Number of Molecules:1
Biological Source:Acinetobacter baumannii
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S20
Gene (Uniprot):rpsT
Chain IDs:N (auth: u)
Chain Length:88
Number of Molecules:1
Biological Source:Acinetobacter baumannii
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S21
Gene (Uniprot):rpsU
Chain IDs:O (auth: v)
Chain Length:71
Number of Molecules:1
Biological Source:Acinetobacter baumannii
Ligand Molecules
Primary Citation
Structure of the 70S Ribosome from the Human Pathogen Acinetobacter baumannii in Complex with Clinically Relevant Antibiotics.
Structure 28 1087 1100.e3 (2020)
PMID: 32857965 DOI: 10.1016/j.str.2020.08.004

Abstact

Acinetobacter baumannii is a Gram-negative bacterium primarily associated with hospital-acquired, often multidrug-resistant (MDR) infections. The ribosome-targeting antibiotics amikacin and tigecycline are among the limited arsenal of drugs available for treatment of such infections. We present high-resolution structures of the 70S ribosome from A. baumannii in complex with these antibiotics, as determined by cryoelectron microscopy. Comparison with the ribosomes of other bacteria reveals several unique structural features at functionally important sites, including around the exit of the polypeptide tunnel and the periphery of the subunit interface. The structures also reveal the mode and site of interaction of these drugs with the ribosome. This work paves the way for the design of new inhibitors of translation to address infections caused by MDR A. baumannii.

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Primary Citation of related structures