6YT9 image
Entry Detail
PDB ID:
6YT9
EMDB ID:
Keywords:
Title:
Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit body
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2020-04-24
Release Date:
2020-09-16
Method Details:
Experimental Method:
Resolution:
2.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Description:16S ribosomal RNA
Chain IDs:A (auth: 2), B (auth: 4)
Chain Length:1544
Number of Molecules:2
Biological Source:Acinetobacter baumannii
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S2
Chain IDs:C (auth: c)
Chain Length:250
Number of Molecules:1
Biological Source:Acinetobacter baumannii
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S4
Chain IDs:D (auth: e)
Chain Length:208
Number of Molecules:1
Biological Source:Acinetobacter baumannii
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S5
Chain IDs:E (auth: f)
Chain Length:165
Number of Molecules:1
Biological Source:Acinetobacter baumannii
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S6
Chain IDs:F (auth: g)
Chain Length:127
Number of Molecules:1
Biological Source:Acinetobacter baumannii
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S8
Chain IDs:G (auth: i)
Chain Length:131
Number of Molecules:1
Biological Source:Acinetobacter baumannii
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S11
Chain IDs:H (auth: l)
Chain Length:128
Number of Molecules:1
Biological Source:Acinetobacter baumannii
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S12
Chain IDs:I (auth: m)
Chain Length:124
Number of Molecules:1
Biological Source:Acinetobacter baumannii
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S15
Chain IDs:J (auth: p)
Chain Length:89
Number of Molecules:1
Biological Source:Acinetobacter baumannii
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S16
Chain IDs:K (auth: q)
Chain Length:83
Number of Molecules:1
Biological Source:Acinetobacter baumannii
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S17
Chain IDs:L (auth: r)
Chain Length:85
Number of Molecules:1
Biological Source:Acinetobacter baumannii
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S18
Chain IDs:M (auth: s)
Chain Length:75
Number of Molecules:1
Biological Source:Acinetobacter baumannii
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S20
Chain IDs:N (auth: u)
Chain Length:88
Number of Molecules:1
Biological Source:Acinetobacter baumannii
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S21
Chain IDs:O (auth: v)
Chain Length:71
Number of Molecules:1
Biological Source:Acinetobacter baumannii
Ligand Molecules
Primary Citation
Structure of the 70S Ribosome from the Human Pathogen Acinetobacter baumannii in Complex with Clinically Relevant Antibiotics.
Structure 28 1087 1100.e3 (2020)
PMID: 32857965 DOI: 10.1016/j.str.2020.08.004

Abstact

Acinetobacter baumannii is a Gram-negative bacterium primarily associated with hospital-acquired, often multidrug-resistant (MDR) infections. The ribosome-targeting antibiotics amikacin and tigecycline are among the limited arsenal of drugs available for treatment of such infections. We present high-resolution structures of the 70S ribosome from A. baumannii in complex with these antibiotics, as determined by cryoelectron microscopy. Comparison with the ribosomes of other bacteria reveals several unique structural features at functionally important sites, including around the exit of the polypeptide tunnel and the periphery of the subunit interface. The structures also reveal the mode and site of interaction of these drugs with the ribosome. This work paves the way for the design of new inhibitors of translation to address infections caused by MDR A. baumannii.

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Primary Citation of related structures