6YQ4 image
Entry Detail
PDB ID:
6YQ4
Keywords:
Title:
Crystal structure of Fusobacterium nucleatum tannase
Biological Source:
PDB Version:
Deposition Date:
2020-04-16
Release Date:
2021-03-24
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.25
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tannase
Chain IDs:A, B, C
Chain Length:495
Number of Molecules:3
Biological Source:Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Primary Citation
A structurally unique Fusobacterium nucleatum tannase provides detoxicant activity against gallotannins and pathogen resistance.
Microb Biotechnol 15 648 667 (2022)
PMID: 33336898 DOI: 10.1111/1751-7915.13732

Abstact

Colorectal cancer pathogenesis and progression is associated with the presence of Fusobacterium nucleatum and the reduction of acetylated derivatives of spermidine, as well as dietary components such as tannin-rich foods. We show that a new tannase orthologue of F. nucleatum (TanBFnn) has significant structural differences with its Lactobacillus plantarum counterpart affecting the flap covering the active site and the accessibility of substrates. Crystallographic and molecular dynamics analysis revealed binding of polyamines to a small cavity that connects the active site with the bulk solvent which interact with catalytically indispensable residues. As a result, spermidine and its derivatives, particularly N8 -acetylated spermidine, inhibit the hydrolytic activity of TanBFnn and increase the toxicity of gallotannins to F. nucleatum. Our results support a model in which the balance between the detoxicant activity of TanBFnn and the presence of metabolic inhibitors can dictate either conducive or unfavourable conditions for the survival of F. nucleatum.

Legend

Protein

Chemical

Disease

Primary Citation of related structures