6YP7 image
Deposition Date 2020-04-15
Release Date 2020-11-25
Last Version Date 2025-07-09
Entry Detail
PDB ID:
6YP7
Keywords:
Title:
PSII-LHCII C2S2 supercomplex from Pisum sativum grown in high light conditions
Biological Source:
Source Organism:
Pisum sativum (Taxon ID: 3888)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Photosystem II protein D1
Gene (Uniprot):psbA
Chain IDs:G (auth: a), X (auth: A)
Chain Length:334
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Photosystem II CP47 reaction center protein
Gene (Uniprot):psbB
Chain IDs:H (auth: b), Y (auth: B)
Chain Length:503
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Photosystem II CP43 reaction center protein
Gene (Uniprot):psbC
Chain IDs:I (auth: c), Z (auth: C)
Chain Length:450
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Photosystem II D2 protein
Gene (Uniprot):psbD
Chain IDs:J (auth: d), AA (auth: D)
Chain Length:341
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit alpha
Gene (Uniprot):psbE
Chain IDs:K (auth: e), BA (auth: E)
Chain Length:75
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit beta
Gene (Uniprot):psbF
Chain IDs:L (auth: f), CA (auth: F)
Chain Length:30
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein 8, chloroplastic
Gene (Uniprot):CAB8
Chain IDs:A (auth: g), B (auth: n), C (auth: y), D (auth: G), E (auth: N), F (auth: Y)
Chain Length:219
Number of Molecules:6
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein H
Gene (Uniprot):psbH
Chain IDs:M (auth: h), DA (auth: H)
Chain Length:60
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein I
Gene (Uniprot):psbI
Chain IDs:N (auth: i), EA (auth: I)
Chain Length:34
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein J
Gene (Uniprot):psbJ
Chain IDs:O (auth: j), FA (auth: J)
Chain Length:35
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein K
Gene (Uniprot):psbK
Chain IDs:P (auth: k), GA (auth: K)
Chain Length:37
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein L
Gene (Uniprot):psbL
Chain IDs:Q (auth: l), HA (auth: L)
Chain Length:37
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein M
Gene (Uniprot):psbM
Chain IDs:R (auth: m), IA (auth: M)
Chain Length:33
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Oxygen-evolving enhancer protein 1, chloroplastic
Gene (Uniprot):PSBO
Chain IDs:S (auth: o), JA (auth: O)
Chain Length:248
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Light harvesting chlorophyll a/b-binding protein Lhcb4.3
Chain IDs:OA (auth: r), RA (auth: R)
Chain Length:222
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Light harvesting chlorophyll a/b-binding protein Lhcb5, CP26
Chain IDs:PA (auth: s), QA (auth: S)
Chain Length:218
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein T
Gene (Uniprot):psbT
Chain IDs:T (auth: t), KA (auth: T)
Chain Length:32
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein W
Chain IDs:U (auth: w), LA (auth: W)
Chain Length:54
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Ultraviolet-B-repressible protein
Chain IDs:V (auth: x), MA (auth: X)
Chain Length:39
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein Z
Gene (Uniprot):psbZ
Chain IDs:W (auth: z), NA (auth: Z)
Chain Length:62
Number of Molecules:2
Biological Source:Pisum sativum
Primary Citation
High-Light versus Low-Light: Effects on Paired Photosystem II Supercomplex Structural Rearrangement in Pea Plants.
Int J Mol Sci 21 ? ? (2020)
PMID: 33207833 DOI: 10.3390/ijms21228643

Abstact

In plant grana thylakoid membranes Photosystem II (PSII) associates with a variable number of antenna proteins (LHCII) to form different types of supercomplexes (PSII-LHCII), whose organization is dynamically adjusted in response to light cues, with the C2S2 more abundant in high-light and the C2S2M2 in low-light. Paired PSII-LHCII supercomplexes interacting at their stromal surface from adjacent thylakoid membranes were previously suggested to mediate grana stacking. Here, we present the cryo-electron microscopy maps of paired C2S2 and C2S2M2 supercomplexes isolated from pea plants grown in high-light and low-light, respectively. These maps show a different rotational offset between the two supercomplexes in the pair, responsible for modifying their reciprocal interaction and energetic connectivity. This evidence reveals a different way by which paired PSII-LHCII supercomplexes can mediate grana stacking at diverse irradiances. Electrostatic stromal interactions between LHCII trimers almost completely overlapping in the paired C2S2 can be the main determinant by which PSII-LHCII supercomplexes mediate grana stacking in plants grown in high-light, whereas the mutual interaction of stromal N-terminal loops of two facing Lhcb4 subunits in the paired C2S2M2 can fulfil this task in plants grown in low-light. The high-light induced accumulation of the Lhcb4.3 protein in PSII-LHCII supercomplexes has been previously reported. Our cryo-electron microscopy map at 3.8 Å resolution of the C2S2 supercomplex isolated from plants grown in high-light suggests the presence of the Lhcb4.3 protein revealing peculiar structural features of this high-light-specific antenna important for photoprotection.

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Primary Citation of related structures