6YOZ image
Entry Detail
PDB ID:
6YOZ
Keywords:
Title:
HiCel7B labelled with b-1,4-glucosyl cyclophellitol
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2020-04-15
Release Date:
2020-09-16
Method Details:
Experimental Method:
Resolution:
1.88 Å
R-Value Free:
0.23
R-Value Work:
0.20
Space Group:
P 41 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Endoglucanase 1
Chain IDs:A (auth: AAA), B (auth: BBB)
Chain Length:400
Number of Molecules:2
Biological Source:Humicola insolens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
PCA A GLN modified residue
Primary Citation
Glycosylated cyclophellitol-derived activity-based probes and inhibitors for cellulases.
Rsc Chem Biol 1 148 155 (2020)
PMID: 34458755 DOI: 10.1039/d0cb00045k

Abstact

Cellulases and related β-1,4-glucanases are essential components of lignocellulose-degrading enzyme mixtures. The detection of β-1,4-glucanase activity typically relies on monitoring the breakdown of purified lignocellulose-derived substrates or synthetic chromogenic substrates, limiting the activities which can be detected and complicating the tracing of activity back to specific components within complex enzyme mixtures. As a tool for the rapid detection and identification of β-1,4-glucanases, a series of glycosylated cyclophellitol inhibitors mimicking β-1,4-glucan oligosaccharides have been synthesised. These compounds are highly efficient inhibitors of HiCel7B, a well-known GH7 endo-β-1,4-glucanase. An elaborated activity-based probe facilitated the direct detection and identification of β-1,4-glucanases within a complex fungal secretome without any detectable cross-reactivity with β-d-glucosidases. These probes and inhibitors add valuable new capacity to the growing toolbox of cyclophellitol-derived probes for the activity-based profiling of biomass-degrading enzymes.

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Primary Citation of related structures