6YO3 image
Entry Detail
PDB ID:
6YO3
Title:
LecA from Pseudomonas aeruginosa in complex with a catechol CAS no. 67984-81-0
Biological Source:
PDB Version:
Deposition Date:
2020-04-14
Release Date:
2020-12-30
Method Details:
Experimental Method:
Resolution:
1.84 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
I 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:PA-I galactophilic lectin
Chain IDs:A, B, C, D
Chain Length:121
Number of Molecules:4
Biological Source:Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Primary Citation
Non-Carbohydrate Glycomimetics as Inhibitors of Calcium(II)-Binding Lectins.
Angew.Chem.Int.Ed.Engl. 60 8104 8114 (2021)
PMID: 33314528 DOI: 10.1002/anie.202013217

Abstact

Because of the antimicrobial resistance crisis, lectins are considered novel drug targets. Pseudomonas aeruginosa utilizes LecA and LecB in the infection process. Inhibition of both lectins with carbohydrate-derived molecules can reduce biofilm formation to restore antimicrobial susceptibility. Here, we focused on non-carbohydrate inhibitors for LecA to explore new avenues for lectin inhibition. From a screening cascade we obtained one experimentally confirmed hit, a catechol, belonging to the well-known PAINS compounds. Rigorous analyses validated electron-deficient catechols as millimolar LecA inhibitors. The first co-crystal structure of a non-carbohydrate inhibitor in complex with a bacterial lectin clearly demonstrates the catechol mimicking the binding of natural glycosides with LecA. Importantly, catechol 3 is the first non-carbohydrate lectin ligand that binds bacterial and mammalian calcium(II)-binding lectins, giving rise to this fundamentally new class of glycomimetics.

Legend

Protein

Chemical

Disease

Primary Citation of related structures