6YMX image
Deposition Date 2020-04-10
Release Date 2020-09-09
Last Version Date 2025-04-09
Entry Detail
PDB ID:
6YMX
Title:
CIII2/CIV respiratory supercomplex from Saccharomyces cerevisiae
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.17 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 1, mitochondrial
Gene (Uniprot):COR1
Chain IDs:M (auth: A), V (auth: L)
Chain Length:431
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 2, mitochondrial
Gene (Uniprot):QCR2
Chain IDs:N (auth: B), W (auth: M)
Chain Length:352
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Molecule:Cytochrome b
Gene (Uniprot):COB
Chain IDs:O (auth: C), X (auth: N)
Chain Length:268
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Molecule:Cytochrome c1, heme protein, mitochondrial
Gene (Uniprot):CYT1
Chain IDs:P (auth: D), Y (auth: O)
Chain Length:248
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit Rieske, mitochondrial
Gene (Uniprot):RIP1
Chain IDs:Q (auth: E), Z (auth: P)
Chain Length:185
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 6, mitochondrial
Gene (Uniprot):QCR6
Chain IDs:R (auth: F)
Chain Length:99
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 7, mitochondrial
Gene (Uniprot):QCR7
Chain IDs:S (auth: G), BA (auth: R)
Chain Length:126
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 8, mitochondrial
Gene (Uniprot):QCR8
Chain IDs:T (auth: H), CA (auth: S)
Chain Length:51
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 9, mitochondrial
Gene (Uniprot):QCR9
Chain IDs:U (auth: I)
Chain Length:54
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 6, mitochondrial
Gene (Uniprot):QCR6
Chain IDs:AA (auth: Q)
Chain Length:75
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 9, mitochondrial
Gene (Uniprot):QCR9
Chain IDs:DA (auth: T)
Chain Length:54
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 10, mitochondrial
Gene (Uniprot):QCR10
Chain IDs:EA (auth: U)
Chain Length:44
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 10, mitochondrial
Gene (Uniprot):QCR10
Chain IDs:FA (auth: V)
Chain Length:51
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 1
Gene (Uniprot):COX1
Chain IDs:A (auth: a)
Chain Length:431
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 2
Gene (Uniprot):COX2
Chain IDs:B (auth: b)
Chain Length:352
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 3
Gene (Uniprot):COX3
Chain IDs:C (auth: c)
Chain Length:268
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 4, mitochondrial
Gene (Uniprot):COX4
Chain IDs:D (auth: d)
Chain Length:248
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 5A, mitochondrial
Gene (Uniprot):COX5A
Chain IDs:E (auth: e)
Chain Length:185
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 6, mitochondrial
Gene (Uniprot):COX6
Chain IDs:F (auth: f)
Chain Length:99
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 7, mitochondrial
Gene (Uniprot):COX7
Chain IDs:G (auth: g)
Chain Length:126
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 8, mitochondrial
Gene (Uniprot):COX8
Chain IDs:H (auth: h)
Chain Length:51
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 9, mitochondrial
Gene (Uniprot):COX9
Chain IDs:I (auth: i)
Chain Length:54
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 12, mitochondrial
Gene (Uniprot):COX12
Chain IDs:J (auth: j)
Chain Length:78
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 13, mitochondrial
Gene (Uniprot):COX13
Chain IDs:K (auth: k)
Chain Length:114
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 26, mitochondrial
Gene (Uniprot):COX26
Chain IDs:L (auth: m)
Chain Length:352
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Primary Citation
Respiratory supercomplexes enhance electron transport by decreasing cytochrome c diffusion distance.
Embo Rep. 21 e51015 e51015 (2020)
PMID: 33016568 DOI: 10.15252/embr.202051015

Abstact

Respiratory chains are crucial for cellular energy conversion and consist of multi-subunit complexes that can assemble into supercomplexes. These structures have been intensively characterized in various organisms, but their physiological roles remain unclear. Here, we elucidate their function by leveraging a high-resolution structural model of yeast respiratory supercomplexes that allowed us to inhibit supercomplex formation by mutation of key residues in the interaction interface. Analyses of a mutant defective in supercomplex formation, which still contains fully functional individual complexes, show that the lack of supercomplex assembly delays the diffusion of cytochrome c between the separated complexes, thus reducing electron transfer efficiency. Consequently, competitive cellular fitness is severely reduced in the absence of supercomplex formation and can be restored by overexpression of cytochrome c. In sum, our results establish how respiratory supercomplexes increase the efficiency of cellular energy conversion, thereby providing an evolutionary advantage for aerobic organisms.

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