6YMU image
Deposition Date 2020-04-09
Release Date 2020-07-22
Last Version Date 2024-01-24
Entry Detail
PDB ID:
6YMU
Keywords:
Title:
Imidazole Glycerol Phosphate Synthase
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.11 Å
R-Value Free:
0.25
R-Value Work:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Imidazole glycerol phosphate synthase subunit HisF
Gene (Uniprot):hisF
Chain IDs:A, C, E
Chain Length:253
Number of Molecules:3
Biological Source:Thermotoga maritima
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Imidazole glycerol phosphate synthase subunit HisH
Gene (Uniprot):hisH
Chain IDs:B, D, F
Chain Length:201
Number of Molecules:3
Biological Source:Thermotoga maritima
Primary Citation
Significance of the Protein Interface Configuration for Allostery in Imidazole Glycerol Phosphate Synthase.
Biochemistry 59 2729 2742 (2020)
PMID: 32633500 DOI: 10.1021/acs.biochem.0c00332

Abstact

Imidazole glycerol phosphate synthase (ImGPS) from Thermotoga maritima is a model enzyme for studying allostery. The ImGPS complex consists of the cyclase subunit HisF and the glutaminase subunit HisH whose activity is stimulated by substrate binding to HisF in a V-type manner. To investigate the significance of a putative closing hinge motion at the cyclase:glutaminase interface for HisH activity, we replaced residue W123 in HisH with the light-switchable unnatural amino acid phenylalanine-4'-azobenzene (AzoF). Crystal structure analysis employing angle, buried surface area, and distance measurements showed that incorporation of AzoF at this position causes a closing of the interface by ∼18 ± 3%. This slightly different interface configuration results in a much higher catalytic efficiency in unstimulated HisH due to an elevated turnover number. Moreover, the catalytic efficiency of HisH when stimulated by binding of a substrate to HisF was also significantly increased by AzoF incorporation. This was caused by a K-type stimulation that led to a decrease in the apparent dissociation constant for its substrate, glutamine. In addition, AzoF improved the apparent binding of a substrate analogue at the HisF active site. Remarkably, light-induced isomerization of AzoF considerably enhanced these effects. In conclusion, our findings confirm that signal transduction from HisF to HisH in ImGPS involves the closing of the cyclase:glutaminase subunit interface and that incorporation of AzoF at a hinge position reinforces this catalytically relevant conformational change.

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Primary Citation of related structures