6YJV image
Deposition Date 2020-04-04
Release Date 2020-08-05
Last Version Date 2024-10-09
Entry Detail
PDB ID:
6YJV
Keywords:
TRANSFERASE
Title:
Crystal structure of unliganded MGAT5 (alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase V) luminal domain with a Lys329-Ile345 loop truncation, in complex with UDP-2-deoxy-2-fluoroglucose and biantennary pentasaccharide M592
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Trichoplusia ni
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.70 Å
R-Value Free:
0.21
R-Value Work:
0.17
Space Group:
P 1
6YJV validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A
Gene (Uniprot):MGAT5
Chain IDs:A (auth: AAA), B (auth: BBB)
Chain Length:515
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:Q09328 Pfam ID:PF15024 EC:2.4.1.155
Ligand Molecules
EDO
SO4
U2F
Primary Citation
Substrate Engagement and Catalytic Mechanisms of N-Acetylglucosaminyltransferase V
Acs Catalysis ? ? ? (2020)
DOI: 10.1021/acscatal.0c02222
Primary Citation of related structures
6YJV