6YJK image
Deposition Date 2020-04-03
Release Date 2020-10-14
Last Version Date 2024-01-24
Entry Detail
PDB ID:
6YJK
Title:
Structure of CYRI-B (FAM49B) from Rhincodon typus
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.37 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:CYRI-B (FAM49B)
Chain IDs:A
Chain Length:325
Number of Molecules:1
Biological Source:Rhincodon typus
Primary Citation
Structure of CYRI-B (FAM49B), a key regulator of cellular actin assembly.
Acta Crystallogr D Struct Biol 76 1015 1024 (2020)
PMID: 33021503 DOI: 10.1107/S2059798320010906

Abstact

In eukaryotes, numerous fundamental processes are controlled by the WAVE regulatory complex (WRC) that regulates cellular actin polymerization, crucial for cell motility, cell-cell adhesion and epithelial differentiation. Actin assembly is triggered by interaction of the small GTPase Rac1 with CYFIP1, a key component of the WRC. Previously known as FAM49B, CYRI-B is a protein that is highly conserved across the Eukaryota and has recently been revealed to be a key regulator of Rac1 activity. Mutation of CYRI-B or alteration of its expression therefore leads to altered actin nucleation dynamics, with impacts on lamellipodia formation, cell migration and infection by intracellular pathogens. In addition, knockdown of CYRI-B expression in cancer cell lines results in accelerated cell proliferation and invasiveness. Here, the structure of Rhincodon typus (whale shark) CYRI-B is presented, which is the first to be reported of any CYRI family member. Solved by X-ray crystallography, the structure reveals that CYRI-B comprises three distinct α-helical subdomains and is highly structurally related to a conserved domain present in CYFIP proteins. The work presented here establishes a template towards a better understanding of CYRI-B biological function.

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