6YHM image
Deposition Date 2020-03-30
Release Date 2020-12-30
Last Version Date 2024-01-24
Entry Detail
PDB ID:
6YHM
Keywords:
Title:
Crystal structure of the C-terminal domain of CNFy from Yersinia pseudotuberculosis
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.13 Å
R-Value Free:
0.18
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cytotoxic necrotizing factor
Gene (Uniprot):cnf
Chain IDs:A
Chain Length:299
Number of Molecules:1
Biological Source:Yersinia pseudotuberculosis
Ligand Molecules
Primary Citation
Crystal structure of bacterial cytotoxic necrotizing factor CNF Y reveals molecular building blocks for intoxication.
Embo J. 40 e105202 e105202 (2021)
PMID: 33410511 DOI: 10.15252/embj.2020105202

Abstact

Cytotoxic necrotizing factors (CNFs) are bacterial single-chain exotoxins that modulate cytokinetic/oncogenic and inflammatory processes through activation of host cell Rho GTPases. To achieve this, they are secreted, bind surface receptors to induce endocytosis and translocate a catalytic unit into the cytosol to intoxicate host cells. A three-dimensional structure that provides insight into the underlying mechanisms is still lacking. Here, we determined the crystal structure of full-length Yersinia pseudotuberculosis CNFY . CNFY consists of five domains (D1-D5), and by integrating structural and functional data, we demonstrate that D1-3 act as export and translocation module for the catalytic unit (D4-5) and for a fused β-lactamase reporter protein. We further found that D4, which possesses structural similarity to ADP-ribosyl transferases, but had no equivalent catalytic activity, changed its position to interact extensively with D5 in the crystal structure of the free D4-5 fragment. This liberates D5 from a semi-blocked conformation in full-length CNFY , leading to higher deamidation activity. Finally, we identify CNF translocation modules in several uncharacterized fusion proteins, which suggests their usability as a broad-specificity protein delivery tool.

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