6YEY image
Deposition Date 2020-03-25
Release Date 2020-07-08
Last Version Date 2024-05-22
Entry Detail
PDB ID:
6YEY
Keywords:
Title:
Xenorhabdus nematophila XptA1 in complex with porcine mucosa heparin
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:A component of insecticidal toxin complex (Tc)
Chain IDs:A, B, C, D, E
Chain Length:2523
Number of Molecules:5
Biological Source:Xenorhabdus nematophila
Ligand Molecules
Primary Citation
Glycan-dependent cell adhesion mechanism of Tc toxins.
Nat Commun 11 2694 2694 (2020)
PMID: 32483155 DOI: 10.1038/s41467-020-16536-7

Abstact

Toxin complex (Tc) toxins are virulence factors of pathogenic bacteria. Tcs are composed of three subunits: TcA, TcB and TcC. TcA facilitates receptor-toxin interaction and membrane permeation, TcB and TcC form a toxin-encapsulating cocoon. While the mechanisms of holotoxin assembly and pore formation have been described, little is known about receptor binding of TcAs. Here, we identify heparins/heparan sulfates and Lewis antigens as receptors for different TcAs from insect and human pathogens. Glycan array screening reveals that all tested TcAs bind negatively charged heparins. Cryo-EM structures of Morganella morganii TcdA4 and Xenorhabdus nematophila XptA1 reveal that heparins/heparan sulfates unexpectedly bind to different regions of the shell domain, including receptor-binding domains. In addition, Photorhabdus luminescens TcdA1 binds to Lewis antigens with micromolar affinity. Here, the glycan interacts with the receptor-binding domain D of the toxin. Our results suggest a glycan dependent association mechanism of Tc toxins on the host cell surface.

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Primary Citation of related structures