6YE2 image
Entry Detail
PDB ID:
6YE2
Keywords:
Title:
Human Ecto-5'-nucleotidase (CD73) in complex with the AMPCP derivative A1202 (compound 4a in publication) in the closed form (crystal form IV)
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2020-03-23
Release Date:
2021-01-20
Method Details:
Experimental Method:
Resolution:
2.44 Å
R-Value Free:
0.23
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:5'-nucleotidase
Chain IDs:A, B
Chain Length:532
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Discovery of Potent and Selective Methylenephosphonic Acid CD73 Inhibitors.
J.Med.Chem. 64 845 860 (2021)
PMID: 33399453 DOI: 10.1021/acs.jmedchem.0c01835

Abstact

Solid tumors are often associated with high levels of extracellular ATP. Ectonucleotidases catalyze the sequential hydrolysis of ATP to adenosine, which potently suppresses T-cell and NK-cell functions via the adenosine receptors (A2a and A2b). The ectonucleotidase CD73 catalyzes the conversion of AMP to adenosine. Thus, increased CD73 enzymatic activity in the tumor microenvironment is a potential mechanism for tumor immune evasion and has been associated with poor prognosis in the clinic. CD73 inhibition is anticipated to restore immune function by skirting this major mechanism of adenosine generation. We have developed a series of potent and selective methylenephosphonic acid CD73 inhibitors via a structure-based design. Key binding interactions of the known inhibitor adenosine-5'-(α,β-methylene)diphosphate (AMPCP) with hCD73 provided the foundation for our early designs. The structure-activity relationship study guided by this structure-based design led to the discovery of 4a, which exhibits excellent potency against CD73, exquisite selectivity against related ectonucleotidases, and a favorable pharmacokinetic profile.

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