6YDI image
Deposition Date 2020-03-20
Release Date 2020-09-30
Last Version Date 2024-01-24
Entry Detail
PDB ID:
6YDI
Keywords:
OXIDOREDUCTASE
Title:
XFEL structure of the Soluble methane monooxygenase hydroxylase and regulatory subunit complex, from Methylosinus trichosporium OB3b, diferrous state
Biological Source:
Source Organism:
Methylosinus trichosporium OB3b (Taxon ID: 595536)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.95 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 41 21 2
6YDI validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Methane monooxygenase
Gene (Uniprot):CQW49_12475
Chain IDs:A (auth: B)
Chain Length:395
Number of Molecules:1
Biological Source:Methylosinus trichosporium OB3b
UniProt ID:A0A2D2D5X7 Pfam ID:PF02332
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Methane monooxygenase component A alpha chain
Gene (Uniprot):mmoX
Chain IDs:B (auth: D)
Chain Length:526
Number of Molecules:1
Biological Source:Methylosinus trichosporium OB3b
UniProt ID:P27353 Pfam ID:PF02332 EC:1.14.13.25
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Methane monooxygenase
Chain IDs:C (auth: F)
Chain Length:169
Number of Molecules:1
Biological Source:Methylosinus trichosporium OB3b
UniProt ID:A0A2D2D0T0 Pfam ID:PF02964
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Methane monooxygenase regulatory protein B
Gene (Uniprot):mmoB
Chain IDs:D (auth: G)
Chain Length:138
Number of Molecules:1
Biological Source:Methylosinus trichosporium OB3b
UniProt ID:P27356 Pfam ID:PF02406 EC:1.14.13.25
Ligand Molecules
FE2
GOL
Primary Citation
High-Resolution XFEL Structure of the Soluble Methane Monooxygenase Hydroxylase Complex with its Regulatory Component at Ambient Temperature in Two Oxidation States.
J. Am. Chem. Soc. 142 14249 14266 (2020)
DOI: 10.1021/jacs.0c05613
Primary Citation of related structures
6YD0
6YDU
6YY3