6YCN image
Entry Detail
PDB ID:
6YCN
Keywords:
Title:
Crystal structure of GcoA F169A bound to o-vanillin
Biological Source:
PDB Version:
Deposition Date:
2020-03-18
Release Date:
2021-02-17
Method Details:
Experimental Method:
Resolution:
1.83 Å
R-Value Free:
0.17
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Aromatic O-demethylase, cytochrome P450 subunit
Mutations:F169A
Chain IDs:A
Chain Length:409
Number of Molecules:1
Biological Source:Amycolatopsis sp. (strain ATCC 39116 / 75iv2)
Primary Citation
Engineering a Cytochrome P450 for Demethylation of Lignin-Derived Aromatic Aldehydes.
Jacs Au 1 252 261 (2021)
PMID: 34467290 DOI: 10.1021/jacsau.0c00103

Abstact

Biological funneling of lignin-derived aromatic compounds is a promising approach for valorizing its catalytic depolymerization products. Industrial processes for aromatic bioconversion will require efficient enzymes for key reactions, including demethylation of O-methoxy-aryl groups, an essential and often rate-limiting step. The recently characterized GcoAB cytochrome P450 system comprises a coupled monoxygenase (GcoA) and reductase (GcoB) that catalyzes oxidative demethylation of the O-methoxy-aryl group in guaiacol. Here, we evaluate a series of engineered GcoA variants for their ability to demethylate o-and p-vanillin, which are abundant lignin depolymerization products. Two rationally designed, single amino acid substitutions, F169S and T296S, are required to convert GcoA into an efficient catalyst toward the o- and p-isomers of vanillin, respectively. Gain-of-function in each case is explained in light of an extensive series of enzyme-ligand structures, kinetic data, and molecular dynamics simulations. Using strains of Pseudomonas putida KT2440 already optimized for p-vanillin production from ferulate, we demonstrate demethylation by the T296S variant in vivo. This work expands the known aromatic O-demethylation capacity of cytochrome P450 enzymes toward important lignin-derived aromatic monomers.

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