ISDA

Deposition Date 2020-03-16

Release Date 2021-03-31

Last Version Date 2024-11-13

Entry Detail

PDB ID:

6YB6

Keywords:

HYDROLASE

Title:

Thrombin in complex with D-Phe-Pro-3-chloro-1,3-dihydroxybenzylamide derivative (13c)

Biological Source:

Source Organism:

Hirudo medicinalis (Taxon ID: 6421)
synthetic construct (Taxon ID: 32630)
Homo sapiens (Taxon ID: 9606)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.33 Å

R-Value Free:

0.15

R-Value Work:

0.13

R-Value Observed:

0.13

Space Group:

C 1 2 1

Download Validation Report

Macromolecular Entities

Polymer Type:polypeptide(L)
Molecule:D-Phe-Pro-3-chloro-1,3-dihydroxybenzylamide derivative
Chain IDs:D
Chain Length:3
Number of Molecules:1
Biological Source:synthetic construct

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Prothrombin
Gene (Uniprot):F2
Chain IDs:B (auth: H)
Chain Length:259
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P00734 Pfam ID:PF00089, PF09396 EC:3.4.21.5

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Hirudin variant-2
Chain IDs:C (auth: I)
Chain Length:12
Number of Molecules:1
Biological Source:Hirudo medicinalis

UniProt ID:P09945

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Prothrombin
Gene (Uniprot):F2
Chain IDs:A (auth: L)
Chain Length:36
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P00734 Pfam ID:PF00089, PF09396 EC:3.4.21.5

Modified Residue