6YAK image
Deposition Date 2020-03-12
Release Date 2020-11-25
Last Version Date 2024-01-24
Entry Detail
PDB ID:
6YAK
Keywords:
Title:
Split gene transketolase, active alpha2beta2 heterotetramer
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.34 Å
R-Value Free:
0.15
R-Value Work:
0.14
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:N-terminal component of the split chain transketolase
Chain IDs:A (auth: AAA), C (auth: CCC)
Chain Length:309
Number of Molecules:2
Biological Source:Carboxydothermus hydrogenoformans
Polymer Type:polypeptide(L)
Molecule:C-terminal component of the split chain transketolase
Chain IDs:B (auth: BBB), D (auth: DDD)
Chain Length:341
Number of Molecules:2
Biological Source:Carboxydothermus hydrogenoformans
Primary Citation
A 'Split-Gene' Transketolase From the Hyper-Thermophilic Bacterium Carboxydothermus hydrogenoformans : Structure and Biochemical Characterization.
Front Microbiol 11 592353 592353 (2020)
PMID: 33193259 DOI: 10.3389/fmicb.2020.592353

Abstact

A novel transketolase has been reconstituted from two separate polypeptide chains encoded by a 'split-gene' identified in the genome of the hyperthermophilic bacterium, Carboxydothermus hydrogenoformans. The reconstituted active α2β2 tetrameric enzyme has been biochemically characterized and its activity has been determined using a range of aldehydes including glycolaldehyde, phenylacetaldehyde and cyclohexanecarboxaldehyde as the ketol acceptor and hydroxypyruvate as the donor. This reaction proceeds to near 100% completion due to the release of the product carbon dioxide and can be used for the synthesis of a range of sugars of interest to the pharmaceutical industry. This novel reconstituted transketolase is thermally stable with no loss of activity after incubation for 1 h at 70°C and is stable after 1 h incubation with 50% of the organic solvents methanol, ethanol, isopropanol, DMSO, acetonitrile and acetone. The X-ray structure of the holo reconstituted α2β2 tetrameric transketolase has been determined to 1.4 Å resolution. In addition, the structure of an inactive tetrameric β4 protein has been determined to 1.9 Å resolution. The structure of the active reconstituted α2β2 enzyme has been compared to the structures of related enzymes; the E1 component of the pyruvate dehydrogenase complex and D-xylulose-5-phosphate synthase, in an attempt to rationalize differences in structure and substrate specificity between these enzymes. This is the first example of a reconstituted 'split-gene' transketolase to be biochemically and structurally characterized allowing its potential for industrial biocatalysis to be evaluated.

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