6YAI image
Deposition Date 2020-03-12
Release Date 2020-07-29
Last Version Date 2024-05-22
Entry Detail
PDB ID:
6YAI
Keywords:
Title:
Clathrin with bound beta2 appendage of AP2
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Sus scrofa (Taxon ID: 9823)
Method Details:
Experimental Method:
Resolution:
9.20 Å
Aggregation State:
3D ARRAY
Reconstruction Method:
SUBTOMOGRAM AVERAGING
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Clathrin heavy chain
Chain IDs:C
Chain Length:1630
Number of Molecules:1
Biological Source:Sus scrofa
Polymer Type:polypeptide(L)
Molecule:Clathrin light chain
Chain IDs:G (auth: D), H (auth: O), M (auth: I), N
Chain Length:229
Number of Molecules:4
Biological Source:Sus scrofa
Polymer Type:polypeptide(L)
Molecule:Clathrin heavy chain
Chain IDs:A (auth: E), D (auth: M), E (auth: A), F (auth: B), I (auth: J), J (auth: K), K (auth: L), L (auth: H)
Chain Length:1630
Number of Molecules:8
Biological Source:Sus scrofa
Polymer Type:polypeptide(L)
Molecule:AP-2 complex subunit beta
Gene (Uniprot):AP2B1
Chain IDs:B (auth: F)
Chain Length:233
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Architecture of the AP2/clathrin coat on the membranes of clathrin-coated vesicles.
Sci Adv 6 eaba8381 eaba8381 (2020)
PMID: 32743075 DOI: 10.1126/sciadv.aba8381

Abstact

Clathrin-mediated endocytosis (CME) is crucial for modulating the protein composition of a cell's plasma membrane. Clathrin forms a cage-like, polyhedral outer scaffold around a vesicle, to which cargo-selecting clathrin adaptors are attached. Adaptor protein complex (AP2) is the key adaptor in CME. Crystallography has shown AP2 to adopt a range of conformations. Here, we used cryo-electron microscopy, tomography, and subtomogram averaging to determine structures, interactions, and arrangements of clathrin and AP2 at the key steps of coat assembly, from AP2 in solution to membrane-assembled clathrin-coated vesicles (CCVs). AP2 binds cargo and PtdIns(4,5)P 2 (phosphatidylinositol 4,5-bisphosphate)-containing membranes via multiple interfaces, undergoing conformational rearrangement from its cytosolic state. The binding mode of AP2 β2 appendage into the clathrin lattice in CCVs and buds implies how the adaptor structurally modulates coat curvature and coat disassembly.

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Primary Citation of related structures