6YAF image
Deposition Date 2020-03-12
Release Date 2020-07-29
Last Version Date 2024-05-22
Entry Detail
PDB ID:
6YAF
Keywords:
Title:
AP2 on a membrane containing tyrosine-based cargo peptide
Biological Source:
Source Organism:
Rattus norvegicus (Taxon ID: 10116)
Homo sapiens (Taxon ID: 9606)
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
9.10 Å
Aggregation State:
3D ARRAY
Reconstruction Method:
SUBTOMOGRAM AVERAGING
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:AP-2 complex subunit alpha-2
Gene (Uniprot):Ap2a2
Chain IDs:A
Chain Length:628
Number of Molecules:1
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Molecule:AP-2 complex subunit beta
Gene (Uniprot):AP2B1
Chain IDs:B
Chain Length:944
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:AP-2 complex subunit mu
Gene (Uniprot):Ap2m1
Chain IDs:C (auth: M)
Chain Length:446
Number of Molecules:1
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Molecule:Tyrosine type cargo signal derived from TGN38
Chain IDs:D (auth: P)
Chain Length:16
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:AP-2 complex subunit sigma
Gene (Uniprot):Ap2s1
Chain IDs:E (auth: S)
Chain Length:142
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Architecture of the AP2/clathrin coat on the membranes of clathrin-coated vesicles.
Sci Adv 6 eaba8381 eaba8381 (2020)
PMID: 32743075 DOI: 10.1126/sciadv.aba8381

Abstact

Clathrin-mediated endocytosis (CME) is crucial for modulating the protein composition of a cell's plasma membrane. Clathrin forms a cage-like, polyhedral outer scaffold around a vesicle, to which cargo-selecting clathrin adaptors are attached. Adaptor protein complex (AP2) is the key adaptor in CME. Crystallography has shown AP2 to adopt a range of conformations. Here, we used cryo-electron microscopy, tomography, and subtomogram averaging to determine structures, interactions, and arrangements of clathrin and AP2 at the key steps of coat assembly, from AP2 in solution to membrane-assembled clathrin-coated vesicles (CCVs). AP2 binds cargo and PtdIns(4,5)P 2 (phosphatidylinositol 4,5-bisphosphate)-containing membranes via multiple interfaces, undergoing conformational rearrangement from its cytosolic state. The binding mode of AP2 β2 appendage into the clathrin lattice in CCVs and buds implies how the adaptor structurally modulates coat curvature and coat disassembly.

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Primary Citation of related structures