6Y9H image
Deposition Date 2020-03-09
Release Date 2021-03-31
Last Version Date 2024-10-16
Entry Detail
PDB ID:
6Y9H
Keywords:
HYDROLASE
Title:
Thrombin in complex with D-Phe-Pro-m-Trifluoromethylbenzylamide derivative (phe2)
Biological Source:
Source Organism:
Hirudo medicinalis (Taxon ID: 6421)
synthetic construct (Taxon ID: 32630)
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.48 Å
R-Value Free:
0.16
R-Value Work:
0.13
R-Value Observed:
0.13
Space Group:
C 1 2 1
6Y9H validation report
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:D-Phe-Pro-m-Trifluoromethylbenzylamide derivative (phe2)
Chain IDs:D (auth: C)
Chain Length:3
Number of Molecules:1
Biological Source:synthetic construct
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Prothrombin
Gene (Uniprot):F2
Chain IDs:B (auth: H)
Chain Length:259
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P00734 Pfam ID:PF00089, PF09396 EC:3.4.21.5
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hirudin variant-2
Chain IDs:C (auth: I)
Chain Length:12
Number of Molecules:1
Biological Source:Hirudo medicinalis
UniProt ID:P09945
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Prothrombin
Gene (Uniprot):F2
Chain IDs:A (auth: L)
Chain Length:36
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P00734 Pfam ID:PF00089, PF09396 EC:3.4.21.5
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
TYS C TYR modified residue
Ligand Molecules
DMS
NA
NAG
PO4
Primary Citation
Thrombin in complex with D-Phe-Pro-m-Trifluoromethylbenzylamide derivative (phe2)
To be published ? ? ? (?)
Primary Citation of related structures
6Y9H