6Y9A image
Deposition Date 2020-03-06
Release Date 2020-08-26
Last Version Date 2024-11-13
Entry Detail
PDB ID:
6Y9A
Title:
Structure of full-length CD20 in complex with Obinutuzumab Fab
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:B-lymphocyte antigen CD20
Gene (Uniprot):MS4A1
Chain IDs:A, B
Chain Length:169
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Obinutuzumab Fab heavy chain
Chain IDs:C (auth: H)
Chain Length:219
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Obinutuzumab Fab Light chain
Chain IDs:D (auth: L)
Chain Length:219
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Binding mechanisms of therapeutic antibodies to human CD20.
Science 369 793 799 (2020)
PMID: 32792392 DOI: 10.1126/science.abb8008

Abstact

Monoclonal antibodies (mAbs) targeting human antigen CD20 (cluster of differentiation 20) constitute important immunotherapies for the treatment of B cell malignancies and autoimmune diseases. Type I and II therapeutic mAbs differ in B cell binding properties and cytotoxic effects, reflecting differential interaction mechanisms with CD20. Here we present 3.7- to 4.7-angstrom cryo-electron microscopy structures of full-length CD20 in complexes with prototypical type I rituximab and ofatumumab and type II obinutuzumab. The structures and binding thermodynamics demonstrate that upon binding to CD20, type II mAbs form terminal complexes that preclude recruitment of additional mAbs and complement components, whereas type I complexes act as molecular seeds to increase mAb local concentration for efficient complement activation. Among type I mAbs, ofatumumab complexes display optimal geometry for complement recruitment. The uncovered mechanisms should aid rational design of next-generation immunotherapies targeting CD20.

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Disease

Primary Citation of related structures