6Y54 image
Entry Detail
PDB ID:
6Y54
Keywords:
Title:
Crystal structure of a Neisseria meningitidis serogroup A capsular oligosaccharide bound to a functional Fab
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2020-02-24
Release Date:
2020-10-07
Method Details:
Experimental Method:
Resolution:
2.67 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Fab A1.1 H chain
Chain IDs:A (auth: H), C (auth: M), E (auth: O)
Chain Length:226
Number of Molecules:3
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Fab A1.1 L chain
Chain IDs:B (auth: L), D (auth: N), F (auth: P)
Chain Length:219
Number of Molecules:3
Biological Source:Mus musculus
Primary Citation
Structure of a protective epitope reveals the importance of acetylation of Neisseria meningitidis serogroup A capsular polysaccharide.
Proc.Natl.Acad.Sci.USA 117 29795 29802 (2020)
PMID: 33158970 DOI: 10.1073/pnas.2011385117

Abstact

Meningococcal meningitis remains a substantial cause of mortality and morbidity worldwide. Until recently, countries in the African meningitis belt were susceptible to devastating outbreaks, largely attributed to serogroup A Neisseria meningitidis (MenA). Vaccination with glycoconjugates of MenA capsular polysaccharide led to an almost complete elimination of MenA clinical cases. To understand the molecular basis of vaccine-induced protection, we generated a panel of oligosaccharide fragments of different lengths and tested them with polyclonal and monoclonal antibodies by inhibition enzyme-linked immunosorbent assay, surface plasmon resonance, and competitive human serum bactericidal assay, which is a surrogate for protection. The epitope was shown to optimize between three and six repeating units and to be O-acetylated. The molecular interactions between a protective monoclonal antibody and a MenA capsular polysaccharide fragment were further elucidated at the atomic level by saturation transfer difference NMR spectroscopy and X-ray crystallography. The epitope consists of a trisaccharide anchored to the antibody via the O- and N-acetyl moieties through either H-bonding or CH-π interactions. In silico docking showed that 3-O-acetylation of the upstream residue is essential for antibody binding, while O-acetate could be equally accommodated at three and four positions of the other two residues. These results shed light on the mechanism of action of current MenA vaccines and provide a foundation for the rational design of improved therapies.

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