6Y23 image
Deposition Date 2020-02-14
Release Date 2020-09-02
Last Version Date 2024-01-24
Entry Detail
PDB ID:
6Y23
Keywords:
Title:
DDR1 kinase autoinhibited by its juxtamembrane region
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.58 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 63 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Epithelial discoidin domain-containing receptor 1
Gene (Uniprot):DDR1
Chain IDs:A, B, C
Chain Length:350
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Two-step release of kinase autoinhibition in discoidin domain receptor 1.
Proc.Natl.Acad.Sci.USA 117 22051 22060 (2020)
PMID: 32839343 DOI: 10.1073/pnas.2007271117

Abstact

Discoidin domain receptor 1 (DDR1) is a collagen-activated receptor tyrosine kinase with important functions in organogenesis and tissue homeostasis. Aberrant DDR1 activity contributes to the progression of human diseases, including fibrosis and cancer. How DDR1 activity is regulated is poorly understood. We investigated the function of the long intracellular juxtamembrane (JM) region of human DDR1 and found that the kinase-proximal segment, JM4, is an important regulator of kinase activity. Crystal structure analysis revealed that JM4 forms a hairpin that penetrates the kinase active site, reinforcing autoinhibition by the activation loop. Using in vitro enzymology with soluble kinase constructs, we established that release from autoinhibition occurs in two distinct steps: rapid autophosphorylation of the JM4 tyrosines, Tyr569 and Tyr586, followed by slower autophosphorylation of activation loop tyrosines. Mutation of JM4 tyrosines abolished collagen-induced DDR1 activation in cells. The insights may be used to develop allosteric, DDR1-specific, kinase inhibitors.

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Primary Citation of related structures