6Y0R image
Deposition Date 2020-02-10
Release Date 2020-06-03
Last Version Date 2024-11-13
Entry Detail
PDB ID:
6Y0R
Keywords:
Title:
Chitooligosaccharide oxidase
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.61 Å
R-Value Free:
0.19
R-Value Work:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Chitooligosaccharide oxidase
Gene (Uniprot):chitO
Chain IDs:A (auth: AAA)
Chain Length:492
Number of Molecules:1
Biological Source:Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)
Ligand Molecules
Primary Citation
Analysis of the structure and substrate scope of chitooligosaccharide oxidase reveals high affinity for C2-modified glucosamines.
Febs Lett. 594 2819 2828 (2020)
PMID: 32491191 DOI: 10.1002/1873-3468.13854

Abstact

Chitooligosaccharide oxidase (ChitO) is a fungal carbohydrate oxidase containing a bicovalently bound FAD cofactor. The enzyme is known to catalyse the oxidation of chitooligosaccharides, oligomers of N-acetylated glucosamines derived from chitin degradation. In this study, the unique substrate acceptance was explored by testing a range of N-acetyl-d-glucosamine derivatives, revealing that ChitO preferentially accepts carbohydrates with a hydrophobic group attached to C2. The enzyme also accepts streptozotocin, a natural product used to treat tumours. Elucidation of the crystal structure provides an explanation for the high affinity towards C2-decorated glucosamines: the active site has a secondary binding pocket that accommodates groups attached at C2. Docking simulations are fully in line with the observed substrate preference. This work expands the knowledge on this versatile enzyme.

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Primary Citation of related structures