6XV4 image
Entry Detail
PDB ID:
6XV4
Keywords:
Title:
Neutron structure of ferric ascorbate peroxidase-ascorbate complex
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2020-01-21
Release Date:
2020-03-18
Method Details:
R-Value Free:
['0.22
R-Value Work:
['0.16
R-Value Observed:
['0.17
Space Group:
P 42 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Ascorbate peroxidase
Chain IDs:A
Chain Length:261
Number of Molecules:1
Biological Source:Glycine max
Primary Citation
Visualizing the protons in a metalloenzyme electron proton transfer pathway.
Proc.Natl.Acad.Sci.USA 117 6484 6490 (2020)
PMID: 32152099 DOI: 10.1073/pnas.1918936117

Abstact

In redox metalloenzymes, the process of electron transfer often involves the concerted movement of a proton. These processes are referred to as proton-coupled electron transfer, and they underpin a wide variety of biological processes, including respiration, energy conversion, photosynthesis, and metalloenzyme catalysis. The mechanisms of proton delivery are incompletely understood, in part due to an absence of information on exact proton locations and hydrogen bonding structures in a bona fide metalloenzyme proton pathway. Here, we present a 2.1-Å neutron crystal structure of the complex formed between a redox metalloenzyme (ascorbate peroxidase) and its reducing substrate (ascorbate). In the neutron structure of the complex, the protonation states of the electron/proton donor (ascorbate) and all of the residues involved in the electron/proton transfer pathway are directly observed. This information sheds light on possible proton movements during heme-catalyzed oxygen activation, as well as on ascorbate oxidation.

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