6XSW image
Deposition Date 2020-07-16
Release Date 2021-07-21
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6XSW
Title:
Structure of the Notch3 NRR in complex with an antibody Fab Fragment
Biological Source:
Source Organism:
Rattus norvegicus (Taxon ID: 10116)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.98 Å
R-Value Free:
0.25
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Anti-N3 Fab Heavy Chain
Chain IDs:A, D, G, H
Chain Length:231
Number of Molecules:4
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Molecule:Anti-N3 Fab Light Chain
Chain IDs:B, E, I, K (auth: L)
Chain Length:214
Number of Molecules:4
Biological Source:Rattus norvegicus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Neurogenic locus notch homolog protein 3
Gene (Uniprot):NOTCH3
Chain IDs:C, F, J, L (auth: X)
Chain Length:280
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
NOTCH3-targeted antibody drug conjugates regress tumors by inducing apoptosis in receptor cells and through transendocytosis into ligand cells.
Cell Rep Med 2 100279 100279 (2021)
PMID: 34095881 DOI: 10.1016/j.xcrm.2021.100279

Abstact

Aberrant NOTCH3 signaling and overexpression is oncogenic, associated with cancer stem cells and drug resistance, yet therapeutic targeting remains elusive. Here, we develop NOTCH3-targeted antibody drug conjugates (NOTCH3-ADCs) by bioconjugation of an auristatin microtubule inhibitor through a protease cleavable linker to two antibodies with differential abilities to inhibit signaling. The signaling inhibitory antibody rapidly induces ligand-independent receptor clustering and internalization through both caveolin and clathrin-mediated pathways. The non-inhibitory antibody also efficiently endocytoses via clathrin without inducing receptor clustering but with slower lysosomal co-localization kinetics. In addition, DLL4 ligand binding to the NOTCH3 receptor mediates transendocytosis of NOTCH3-ADCs into ligand-expressing cells. NOTCH3-ADCs internalize into receptor and ligand cells independent of signaling and induce cell death in both cell types representing an atypical mechanism of ADC cytotoxicity. Treatment of xenografts with NOTCH3-ADCs leads to sustained tumor regressions, outperforms standard-of-care chemotherapy, and allows targeting of tumors that overexpress NOTCH3 independent of signaling inhibition.

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Primary Citation of related structures