6XPN image
Deposition Date 2020-07-08
Release Date 2020-08-26
Last Version Date 2024-10-09
Entry Detail
PDB ID:
6XPN
Title:
Z-loop Deletion Mutant of AztC from Paracoccus denitrificans
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.26 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Periplasmic solute binding protein
Gene (Uniprot):aztC
Mutagens:deleted residues 222-229
Chain IDs:A (auth: B), B (auth: A)
Chain Length:301
Number of Molecules:2
Biological Source:Paracoccus denitrificans (strain Pd 1222)
Ligand Molecules
Primary Citation
Structural Features Mediating Zinc Binding and Transfer in the AztABCD Zinc Transporter System.
Biomolecules 10 ? ? (2020)
PMID: 32781785 DOI: 10.3390/biom10081156

Abstact

Many bacteria require ATP binding cassette (ABC) transporters for the import of the essential metal zinc from limited environments. These systems rely on a periplasmic or cell-surface solute binding protein (SBP) to bind zinc with high affinity and specificity. AztABCD is one such zinc transport system recently identified in a large group of diverse bacterial species. In addition to a classical SBP (AztC), the operon also includes a periplasmic metallochaperone (AztD) shown to transfer zinc directly to AztC. Crystal structures of both proteins from Paracoccus denitrificans have been solved and suggest several structural features on each that may be important for zinc binding and transfer. Here we determine zinc binding affinity, dissociation kinetics, and transfer kinetics for several deletion mutants as well as a crystal structure for one of them. The results indicate specific roles for loop structures on AztC and an N-terminal motif on AztD in zinc binding and transfer. These data are consistent with a structural transfer model proposed previously and provide further mechanistic insight into the processes of zinc binding and transfer.

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Primary Citation of related structures
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