6XOG image
Entry Detail
PDB ID:
6XOG
Title:
Structure of SUMO1-ML786519 adduct bound to SAE
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2020-07-07
Release Date:
2021-03-10
Method Details:
Experimental Method:
Resolution:
1.98 Å
R-Value Free:
0.24
R-Value Work:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:SUMO-activating enzyme subunit 1
Chain IDs:A
Chain Length:346
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:SUMO-activating enzyme subunit 2
Chain IDs:B
Chain Length:640
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Small ubiquitin-related modifier 1
Chain IDs:C
Chain Length:101
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation

Abstact

SUMOylation is a reversible post-translational modification that regulates protein function through covalent attachment of small ubiquitin-like modifier (SUMO) proteins. The process of SUMOylating proteins involves an enzymatic cascade, the first step of which entails the activation of a SUMO protein through an ATP-dependent process catalyzed by SUMO-activating enzyme (SAE). Here, we describe the identification of TAK-981, a mechanism-based inhibitor of SAE which forms a SUMO-TAK-981 adduct as the inhibitory species within the enzyme catalytic site. Optimization of selectivity against related enzymes as well as enhancement of mean residence time of the adduct were critical to the identification of compounds with potent cellular pathway inhibition and ultimately a prolonged pharmacodynamic effect and efficacy in preclinical tumor models, culminating in the identification of the clinical molecule TAK-981.

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Primary Citation of related structures