6XMG image
Deposition Date 2020-06-30
Release Date 2021-01-13
Last Version Date 2025-05-14
Entry Detail
PDB ID:
6XMG
Keywords:
Title:
Cryo-EM structure of Cas12g ternary complex
Biological Source:
Source Organism:
metagenome (Taxon ID: 256318)
Method Details:
Experimental Method:
Resolution:
4.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:CRISPR-Cas
Chain IDs:A
Chain Length:767
Number of Molecules:1
Biological Source:metagenome
Polymer Type:polyribonucleotide
Molecule:RNA (130-MER)
Chain IDs:B (auth: C)
Chain Length:136
Number of Molecules:1
Biological Source:metagenome
Polymer Type:polyribonucleotide
Molecule:RNA (5'-R(P*UP*UP*AP*AP*UP*GP*CP*GP*GP*UP*AP*GP*UP*UP*UP*AP*UP*CP*AP*CP*AP*GP*UP*U)-3')
Chain IDs:C (auth: E)
Chain Length:24
Number of Molecules:1
Biological Source:metagenome
Ligand Molecules
Primary Citation
Cryo-EM structure of the RNA-guided ribonuclease Cas12g.
Nat.Chem.Biol. 17 387 393 (2021)
PMID: 33495647 DOI: 10.1038/s41589-020-00721-2

Abstact

Cas12g, the type V-G CRISPR-Cas effector, is an RNA-guided ribonuclease that targets single-stranded RNA substrate. The CRISPR-Cas12g system offers a potential platform for transcriptome engineering and diagnostic applications. We determined the structures of Cas12g-guide RNA complexes in the absence and presence of target RNA by cryo-EM to a resolution of 3.1 Å and 4.8 Å, respectively. Cas12g adopts a bilobed structure with miniature REC2 and Nuc domains, whereas the guide RNAs fold into a flipped 'F' shape, which is primarily recognized by the REC lobe. Target RNA and the CRISPR RNA (crRNA) guide form a duplex that inserts into the central cavity between the REC and NUC lobes, inducing conformational changes in both lobes to activate Cas12g. The structural insights would facilitate the development of Cas12g-based applications.

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Primary Citation of related structures