6XJI image
Deposition Date 2020-06-23
Release Date 2020-10-14
Last Version Date 2025-05-28
Entry Detail
PDB ID:
6XJI
Title:
PmtCD ABC exporter at C1 symmetry
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phenol-soluble modulin export ABC transporter permease subunit PmtD
Chain IDs:A, B
Chain Length:266
Number of Molecules:2
Biological Source:Staphylococcus aureus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ABC transporter ATP-binding protein
Gene (Uniprot):ybhF_2
Chain IDs:C, D
Chain Length:290
Number of Molecules:2
Biological Source:Staphylococcus aureus
Primary Citation
Structural insight into the Staphylococcus aureus ATP-driven exporter of virulent peptide toxins
Sci Adv 6 eabb8219 ? (2020)
PMID: 32998902 DOI: 10.1126/sciadv.abb8219

Abstact

Staphylococcus aureus is a major human pathogen that has acquired alarming broad-spectrum antibiotic resistance. One group of secreted toxins with key roles during infection is the phenol-soluble modulins (PSMs). PSMs are amphipathic, membrane-destructive cytolytic peptides that are exported to the host-cell environment by a designated adenosine 5'-triphosphate (ATP)-binding cassette (ABC) transporter, the PSM transporter (PmtABCD). Here, we demonstrate that the minimal Pmt unit necessary for PSM export is PmtCD and provide its first atomic characterization by single-particle cryo-EM and x-ray crystallography. We have captured the transporter in the ATP-bound state at near atomic resolution, revealing a type II ABC exporter fold, with an additional cytosolic domain. Comparison to a lower-resolution nucleotide-free map displaying an "open" conformation and putative hydrophobic inner chamber of a size able to accommodate the binding of two PSM peptides provides mechanistic insight and sets the foundation for therapeutic design.

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Primary Citation of related structures