6XI3 image
Entry Detail
PDB ID:
6XI3
Title:
Crystal structure of tetra-tandem repeat in extending region of large adhesion protein
Biological Source:
PDB Version:
Deposition Date:
2020-06-19
Release Date:
2020-10-14
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.23
R-Value Work:
0.17
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Large adhesion protein (Lap) involved in biofilm formation
Chain IDs:A (auth: AAA)
Chain Length:414
Number of Molecules:1
Biological Source:Marinobacter hydrocarbonoclasticus (strain ATCC 49840 / DSM 8798 / SP17)
Primary Citation
Essential role of calcium in extending RTX adhesins to their target.
J Struct Biol X 4 100036 100036 (2020)
PMID: 32984811 DOI: 10.1016/j.yjsbx.2020.100036

Abstact

RTX adhesins are long, multi-domain proteins present on the outer membrane of many Gram-negative bacteria. From this vantage point, adhesins use their distal ligand-binding domains for surface attachment leading to biofilm formation. To expand the reach of the ligand-binding domains, RTX adhesins maintain a central extender region of multiple tandem repeats, which makes up most of the proteins' large molecular weight. Alignments of the 10-15-kDa extender domains show low sequence identity between adhesins. Here we have produced and structurally characterized protein constructs of four tandem repeats (tetra-tandemers) from two different RTX adhesins. In comparing the tetra-tandemers to each other and already solved structures from Marinomonas primoryensis and Salmonella enterica, the extender domains fold as diverse beta-sandwich structures with widely differing calcium contents. However, all the tetra-tandemers have at least one calcium ion coordinated in the linker region between beta-sandwich domains whose role appears to be the rigidification of the extender region to help the adhesin extend its reach.

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