6XI1 image
Deposition Date 2020-06-19
Release Date 2020-10-14
Last Version Date 2024-03-06
Entry Detail
PDB ID:
6XI1
Title:
Crystal structure of tetra-tandem repeat in extending RTX adhesin from Aeromonas hydrophila
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.75 Å
R-Value Free:
0.20
R-Value Work:
0.18
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Flagellin hook IN motif family
Gene (Uniprot):AHA_3491
Chain IDs:A (auth: AAA), B (auth: BBB)
Chain Length:449
Number of Molecules:2
Biological Source:Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / JCM 1027 / KCTC 2358 / NCIMB 9240)
Primary Citation
Essential role of calcium in extending RTX adhesins to their target.
J Struct Biol X 4 100036 100036 (2020)
PMID: 32984811 DOI: 10.1016/j.yjsbx.2020.100036

Abstact

RTX adhesins are long, multi-domain proteins present on the outer membrane of many Gram-negative bacteria. From this vantage point, adhesins use their distal ligand-binding domains for surface attachment leading to biofilm formation. To expand the reach of the ligand-binding domains, RTX adhesins maintain a central extender region of multiple tandem repeats, which makes up most of the proteins' large molecular weight. Alignments of the 10-15-kDa extender domains show low sequence identity between adhesins. Here we have produced and structurally characterized protein constructs of four tandem repeats (tetra-tandemers) from two different RTX adhesins. In comparing the tetra-tandemers to each other and already solved structures from Marinomonas primoryensis and Salmonella enterica, the extender domains fold as diverse beta-sandwich structures with widely differing calcium contents. However, all the tetra-tandemers have at least one calcium ion coordinated in the linker region between beta-sandwich domains whose role appears to be the rigidification of the extender region to help the adhesin extend its reach.

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Primary Citation of related structures
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