6XGQ image
Deposition Date 2020-06-17
Release Date 2020-07-01
Last Version Date 2024-03-06
Entry Detail
PDB ID:
6XGQ
Keywords:
Title:
YSD1 bacteriophage capsid
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:YSD1_17
Gene (Uniprot):YSD1_17
Chain IDs:A, B, C, D, E, F, G
Chain Length:139
Number of Molecules:7
Biological Source:Bacteriophage sp.
Polymer Type:polypeptide(L)
Molecule:YSD1_16
Gene (Uniprot):YSD1_16
Chain IDs:H (auth: a), I (auth: b), J (auth: c), K (auth: d), L (auth: e), M (auth: f), N (auth: g)
Chain Length:139
Number of Molecules:7
Biological Source:Bacteriophage sp.
Ligand Molecules
Primary Citation
The architecture and stabilisation of flagellotropic tailed bacteriophages.
Nat Commun 11 3748 3748 (2020)
PMID: 32719311 DOI: 10.1038/s41467-020-17505-w

Abstact

Flagellotropic bacteriophages engage flagella to reach the bacterial surface as an effective means to increase the capture radius for predation. Structural details of these viruses are of great interest given the substantial drag forces and torques they face when moving down the spinning flagellum. We show that the main capsid and auxiliary proteins form two nested chainmails that ensure the integrity of the bacteriophage head. Core stabilising structures are conserved in herpesviruses suggesting their ancestral origin. The structure of the tail also reveals a robust yet pliable assembly. Hexameric rings of the tail-tube protein are braced by the N-terminus and a β-hairpin loop, and interconnected along the tail by the splayed β-hairpins. By contrast, we show that the β-hairpin has an inhibitory role in the tail-tube precursor, preventing uncontrolled self-assembly. Dyads of acidic residues inside the tail-tube present regularly-spaced motifs well suited to DNA translocation into bacteria through the tail.

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Primary Citation of related structures