6XGP image
Entry Detail
PDB ID:
6XGP
Keywords:
Title:
YSD1_17 major capsid protein
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2020-06-17
Release Date:
2020-07-01
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:YSD1_17 major capsid protein
Chain IDs:A, B
Chain Length:354
Number of Molecules:2
Biological Source:Bacteriophage sp.
Primary Citation
The architecture and stabilisation of flagellotropic tailed bacteriophages.
Nat Commun 11 3748 3748 (2020)
PMID: 32719311 DOI: 10.1038/s41467-020-17505-w

Abstact

Flagellotropic bacteriophages engage flagella to reach the bacterial surface as an effective means to increase the capture radius for predation. Structural details of these viruses are of great interest given the substantial drag forces and torques they face when moving down the spinning flagellum. We show that the main capsid and auxiliary proteins form two nested chainmails that ensure the integrity of the bacteriophage head. Core stabilising structures are conserved in herpesviruses suggesting their ancestral origin. The structure of the tail also reveals a robust yet pliable assembly. Hexameric rings of the tail-tube protein are braced by the N-terminus and a β-hairpin loop, and interconnected along the tail by the splayed β-hairpins. By contrast, we show that the β-hairpin has an inhibitory role in the tail-tube precursor, preventing uncontrolled self-assembly. Dyads of acidic residues inside the tail-tube present regularly-spaced motifs well suited to DNA translocation into bacteria through the tail.

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Primary Citation of related structures