6XCP image
Entry Detail
PDB ID:
6XCP
Keywords:
Title:
Immune receptor complex
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2020-06-08
Release Date:
2021-07-14
Method Details:
Experimental Method:
Resolution:
3.30 Å
R-Value Free:
0.26
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:MHC class II HLA-DQ-alpha chain
Mutations:I72C
Chain IDs:A
Chain Length:193
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Hybrid insulin peptide, MHC class II HLA-DQ8-beta chain fusion
Chain IDs:B (auth: C)
Chain Length:230
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:T-CELL-RECEPTOR, A2.13-alpha chain
Chain IDs:C (auth: D)
Chain Length:203
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:T-CELL-RECEPTOR, A2.13-beta chain
Chain IDs:D (auth: E)
Chain Length:240
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
T cell receptor recognition of hybrid insulin peptides bound to HLA-DQ8.
Nat Commun 12 5110 5110 (2021)
PMID: 34433824 DOI: 10.1038/s41467-021-25404-x

Abstact

HLA-DQ8, a genetic risk factor in type I diabetes (T1D), presents hybrid insulin peptides (HIPs) to autoreactive CD4+ T cells. The abundance of spliced peptides binding to HLA-DQ8 and how they are subsequently recognised by the autoreactive T cell repertoire is unknown. Here we report, the HIP (GQVELGGGNAVEVLK), derived from splicing of insulin and islet amyloid polypeptides, generates a preferred peptide-binding motif for HLA-DQ8. HLA-DQ8-HIP tetramer+ T cells from the peripheral blood of a T1D patient are characterised by repeated TRBV5 usage, which matches the TCR bias of CD4+ T cells reactive to the HIP peptide isolated from the pancreatic islets of a patient with T1D. The crystal structure of three TRBV5+ TCR-HLA-DQ8-HIP complexes shows that the TRBV5-encoded TCR β-chain forms a common landing pad on the HLA-DQ8 molecule. The N- and C-termini of the HIP is recognised predominantly by the TCR α-chain and TCR β-chain, respectively, in all three TCR ternary complexes. Accordingly, TRBV5 + TCR recognition of HIP peptides might occur via a 'polarised' mechanism, whereby each chain within the αβTCR heterodimer recognises distinct origins of the spliced peptide presented by HLA-DQ8.

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Primary Citation of related structures