6XC0 image
Deposition Date 2020-06-07
Release Date 2020-12-02
Last Version Date 2024-10-30
Entry Detail
PDB ID:
6XC0
Keywords:
Title:
Crystal structure of bacteriophage T4 spackle and lysozyme in monoclinic form
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.78 Å
R-Value Free:
0.19
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Lysozyme
Gene (Uniprot):5
Chain IDs:A, B
Chain Length:177
Number of Molecules:2
Biological Source:Escherichia virus T4
Polymer Type:polypeptide(L)
Molecule:Protein spackle
Gene (Uniprot):sp
Chain IDs:C, D
Chain Length:105
Number of Molecules:2
Biological Source:Escherichia virus T4
Primary Citation
Structural basis of superinfection exclusion by bacteriophage T4 Spackle.
Commun Biol 3 691 691 (2020)
PMID: 33214665 DOI: 10.1038/s42003-020-01412-3

Abstact

A bacterial cell infected with T4 phage rapidly establishes resistance against further infections by the same or closely related T-even-type bacteriophages - a phenomenon called superinfection exclusion. Here we show that one of the T4 early gene products and a periplasmic protein, Spackle, forms a stoichiometric complex with the lysozyme domain of T4 tail spike protein gp5 and potently inhibits its activity. Crystal structure of the Spackle-gp5 lysozyme complex shows that Spackle binds to a horseshoe-shaped basic patch surrounding the oligosaccharide-binding cleft and induces an allosteric conformational change of the active site. In contrast, Spackle does not appreciably inhibit the lysozyme activity of cytoplasmic T4 endolysin responsible for cell lysis to release progeny phage particles at the final step of the lytic cycle. Our work reveals a unique mode of inhibition for lysozymes, a widespread class of enzymes in biology, and provides a mechanistic understanding of the T4 bacteriophage superinfection exclusion.

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