6X98 image
Deposition Date 2020-06-02
Release Date 2021-12-08
Last Version Date 2024-10-30
Entry Detail
PDB ID:
6X98
Keywords:
VIRAL PROTEIN/IMMUNE SYSTEM
Title:
Cryo-EM model of HIV-1 Env BG505 SOSIP.664 in complex with rabbit monoclonal antibody 11B fragment antigen binding variable domain
Biological Source:
Source Organism:
Human immunodeficiency virus 1 (Taxon ID: 11676)
Oryctolagus cuniculus (Taxon ID: 9986)
Host Organism:
Homo sapiens
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.38 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
6X98 validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:BG505 HIV-1 Env gp120
Gene (Uniprot):env
Mutagens:T332N, A501C, E509R, K510R, A512R, V513R
Chain IDs:A, E (auth: C), I (auth: G)
Chain Length:516
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
UniProt ID:Q2N0S6 Pfam ID:PF00516, PF00517
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:BG505 HIV-1 Env gp41
Gene (Uniprot):env
Mutagens:I559P, T605C
Chain IDs:B, F (auth: D), J (auth: I)
Chain Length:153
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
UniProt ID:Q2N0S6 Pfam ID:PF00516, PF00517
Polymer Type:polypeptide(L)
Molecule:monoclonal antibody 11B fragment antigen binding heavy chain
Chain IDs:D (auth: H), H (auth: F), L (auth: K)
Chain Length:241
Number of Molecules:3
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:monoclonal antibody 11B kappa chain
Chain IDs:C (auth: L), G (auth: E), K (auth: J)
Chain Length:237
Number of Molecules:3
Biological Source:Oryctolagus cuniculus
Ligand Molecules
NAG
Primary Citation
Limited breadth of anti-HIV Env glycan hole antibodies is further hindered by strain-specific peptide interactions
To Be Published ? ? ? (?)
Primary Citation of related structures
6X98