6X6O image
Deposition Date 2020-05-28
Release Date 2020-09-16
Last Version Date 2024-10-09
Entry Detail
PDB ID:
6X6O
Keywords:
Title:
Crystal structure of T4 protein Spackle as determined by native SAD phasing
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.52 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
I 2 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein spackle
Gene (Uniprot):sp
Chain IDs:A, B
Chain Length:105
Number of Molecules:2
Biological Source:Escherichia virus T4
Ligand Molecules
Primary Citation
Crystal structure of bacteriophage T4 Spackle as determined by native SAD phasing.
Acta Crystallogr D Struct Biol 76 899 904 (2020)
PMID: 32876065 DOI: 10.1107/S2059798320010979

Abstact

The crystal structure of a bacteriophage T4 early gene product, Spackle, was determined by native sulfur single-wavelength anomalous diffraction (SAD) phasing using synchrotron radiation and was refined to 1.52 Å resolution. The structure shows that Spackle consists of a bundle of five α-helices, forming a relatively flat disc-like overall shape. Although Spackle forms a dimer in the crystal, size-exclusion chromatography with multi-angle light scattering shows that it is monomeric in solution. Mass spectrometry confirms that purified mature Spackle lacks the amino-terminal signal peptide and contains an intramolecular disulfide bond, consistent with its proposed role in the periplasm of T4 phage-infected Escherichia coli cells. The surface electrostatic potential of Spackle shows a strikingly bipolar charge distribution, suggesting a possible mode of membrane association and inhibition of the tail lysozyme activity in T4 bacteriophage superinfection exclusion.

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Primary Citation of related structures