ISDA

Deposition Date 2020-05-22

Release Date 2020-08-12

Last Version Date 2024-10-09

Entry Detail

PDB ID:

6X48

Keywords:

UNKNOWN FUNCTION

Title:

Sortilin-Progranulin Interaction With Compound 17

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Cricetulus griseus

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.90 Å

R-Value Free:

0.25

R-Value Work:

0.19

R-Value Observed:

0.19

Space Group:

C 1 2 1

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Sortilin
Gene (Uniprot):SORT1
Chain IDs:A
Chain Length:663
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q99523 Pfam ID:PF15902, PF15901

Ligand Molecules

GOL

UNL

UP4

Primary Citation

Identification of potent inhibitors of the sortilin-progranulin interaction.

Stachel, S.J, Ginnetti, A.T, Johnson, S.A, Cramer, P, Wang, Y, Bukhtiyarova, M, Krosky, D, Stump, C, Hurzy, D.M, Schlegel, K.A, Cooke, A.J, Allen, S, O'Donnell, G, Ziebell, M, Parthasarathy, G, Getty, K.L, Ho, T, Ou, Y, Jovanovska, A, Carroll, S.S, Pausch, M, Lumb, K, Mosser, S.D, Voleti, B, Klein, D.J, Soisson, S.M, Zerbinatti, C, Coleman, P.J.Show

Bioorg.Med.Chem.Lett. 30 127403 127403 (2020)

PMID: 32738972 DOI: 10.1016/j.bmcl.2020.127403

Abstact

High-throughput screening methods have been used to identify two novel series of inhibitors that disrupt progranulin binding to sortilin. Exploration of structure-activity relationships (SAR) resulted in compounds with sufficient potency and physicochemical properties to enable co-crystallization with sortilin. These co-crystal structures supported observed SAR trends and provided guidance for additional avenues for designing compounds with additional interactions within the binding site.

Legend

Protein

Chemical

Disease

Primary Citation of related structures