6X0B image
Deposition Date 2020-05-15
Release Date 2020-07-22
Last Version Date 2023-10-18
Entry Detail
PDB ID:
6X0B
Keywords:
Title:
Crystal Structure of Thioredoxin NaTrxh from Nicotiana alata
Biological Source:
Source Organism:
Nicotiana alata (Taxon ID: 4087)
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Thioredoxin H
Gene (Uniprot):Trxh
Chain IDs:A, B
Chain Length:152
Number of Molecules:2
Biological Source:Nicotiana alata
Ligand Molecules
Primary Citation
High resolution crystal structure of NaTrxh from Nicotiana alata and its interaction with the S-RNase.
J.Struct.Biol. 212 107578 107578 (2020)
PMID: 32682729 DOI: 10.1016/j.jsb.2020.107578

Abstact

Thioredoxins are regulatory proteins that reduce disulfide bonds on target proteins. NaTrxh, which belongs to the plant thioredoxin family h subgroup 2, interacts and reduces the S-RNase enhancing its ribonuclease activity seven-fold, resulting an essential protein for pollen rejection inNicotiana.Here, the crystal structure of NaTrxh at 1.7 Å by X-ray diffraction is reported. NaTrxh conserves the typical fold observed in other thioredoxins from prokaryotes and eukaryotes, but it contains extensions towards both N- and C-termini.The NaTrxh N-terminal extension participates in the reduction of S-RNase, and in the structure reported here, this is orientated towards the reactive site. The interaction between SF11-RNase and the NaTrxh N-terminal was simulated and the short-lived complex observed lasted for a tenth of ns. Moreover, we identified certain amino acids as SF11-RNase-E155 and NaTrxh-M104 as good candidates to contribute to the stability of the complex. Furthermore, we simulated the reduction of the C153-C186 SF11-RNase disulfide bond and observed subtle changes that affect the entire core, which might explain the increase in the ribonuclease activity of S-RNase when it is reduced by NaTrxh.

Legend

Protein

Chemical

Disease

Primary Citation of related structures