6WY1 image
Entry Detail
PDB ID:
6WY1
Keywords:
Title:
Crystal structure of an engineered thermostable dengue virus 2 envelope protein dimer
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2020-05-12
Release Date:
2021-11-10
Method Details:
Experimental Method:
Resolution:
3.42 Å
R-Value Free:
0.33
R-Value Work:
0.31
R-Value Observed:
0.31
Space Group:
P 6 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Dengue 2 soluble recombinant envelope
Mutations:G106D, A259W, T262R, F279W, T280P
Chain IDs:A
Chain Length:408
Number of Molecules:1
Biological Source:Dengue virus 2
Ligand Molecules
Primary Citation
Designed, highly expressing, thermostable dengue virus 2 envelope protein dimers elicit quaternary epitope antibodies.
Sci Adv 7 eabg4084 eabg4084 (2021)
PMID: 34652943 DOI: 10.1126/sciadv.abg4084

Abstact

Dengue virus (DENV) is a worldwide health burden, and a safe vaccine is needed. Neutralizing antibodies bind to quaternary epitopes on DENV envelope (E) protein homodimers. However, recombinantly expressed soluble E proteins are monomers under vaccination conditions and do not present these quaternary epitopes, partly explaining their limited success as vaccine antigens. Using molecular modeling, we found DENV2 E protein mutations that induce dimerization at low concentrations (<100 pM) and enhance production yield by more than 50-fold. Cross-dimer epitope antibodies bind to the stabilized dimers, and a crystal structure resembles the wild-type (WT) E protein bound to a dimer epitope antibody. Mice immunized with the stabilized dimers developed antibodies that bind to E dimers and not monomers and elicited higher levels of DENV2-neutralizing antibodies compared to mice immunized with WT E antigen. Our findings demonstrate the feasibility of using structure-based design to produce subunit vaccines for dengue and other flaviviruses.

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