6WXL image
Deposition Date 2020-05-11
Release Date 2021-06-09
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6WXL
Keywords:
Title:
Cryo-EM structure of the VRC315 clinical trial, vaccine-elicited, human antibody 1D12 in complex with an H7 SH13 HA trimer
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.76 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin HA1 chain
Gene (Uniprot):HA
Chain IDs:A, K (auth: C), L (auth: G)
Chain Length:321
Number of Molecules:3
Biological Source:Influenza A virus (A/Shanghai/JS01/2013(H7N9))
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin HA2 chain
Gene (Uniprot):HA
Chain IDs:B, E (auth: D), H (auth: I)
Chain Length:221
Number of Molecules:3
Biological Source:Influenza A virus (A/Shanghai/JS01/2013(H7N9))
Polymer Type:polypeptide(L)
Molecule:1D21 Heavy chain
Chain IDs:D (auth: H), G (auth: F), J (auth: K)
Chain Length:232
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:1D12 Light chain
Chain IDs:C (auth: L), F (auth: E), I (auth: J)
Chain Length:221
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structure of an influenza group 2-neutralizing antibody targeting the hemagglutinin stem supersite.
Structure ? ? ? (2022)
PMID: 35489332 DOI: 10.1016/j.str.2022.04.003

Abstact

Several influenza antibodies with broad group 2 neutralization have recently been isolated. Here, we analyze the structure, class, and binding of one of these antibodies from an H7N9 vaccine trial, 315-19-1D12. The cryo-EM structure of 315-19-1D12 Fab in complex with the hemagglutinin (HA) trimer revealed the antibody to recognize the helix A region of the HA stem, at the supersite of vulnerability recognized by group 1-specific and by cross-group-neutralizing antibodies. 315-19-1D12 was derived from HV1-2 and KV2-28 genes and appeared to form a new antibody class. Bioinformatic analysis indicated its group 2 neutralization specificity to be a consequence of four key residue positions. We specifically tested the impact of the group 1-specific N33 glycan, which decreased but did not abolish group 2 binding of 315-19-1D12. Overall, this study highlights the recognition of a broad group 2-neutralizing antibody, revealing unexpected diversity in neutralization specificity for antibodies that recognize the HA stem supersite.

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Primary Citation of related structures