6WW5 image
Deposition Date 2020-05-07
Release Date 2020-09-16
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6WW5
Title:
Structure of VcINDY-Na-Fab84 in nanodisc
Biological Source:
Source Organism:
Vibrio cholerae (Taxon ID: 666)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.15 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DASS family sodium-coupled anion symporter
Chain IDs:A, B
Chain Length:449
Number of Molecules:2
Biological Source:Vibrio cholerae
Polymer Type:polypeptide(L)
Molecule:Fab84 Heavy Chain
Chain IDs:C, D (auth: E)
Chain Length:261
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Fab84 Light Chain
Chain IDs:E (auth: F), F (auth: D)
Chain Length:238
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structural basis for the reaction cycle of DASS dicarboxylate transporters.
Elife 9 ? ? (2020)
PMID: 32869741 DOI: 10.7554/eLife.61350

Abstact

Citrate, α-ketoglutarate and succinate are TCA cycle intermediates that also play essential roles in metabolic signaling and cellular regulation. These di- and tricarboxylates are imported into the cell by the divalent anion sodium symporter (DASS) family of plasma membrane transporters, which contains both cotransporters and exchangers. While DASS proteins transport substrates via an elevator mechanism, to date structures are only available for a single DASS cotransporter protein in a substrate-bound, inward-facing state. We report multiple cryo-EM and X-ray structures in four different states, including three hitherto unseen states, along with molecular dynamics simulations, of both a cotransporter and an exchanger. Comparison of these outward- and inward-facing structures reveal how the transport domain translates and rotates within the framework of the scaffold domain through the transport cycle. Additionally, we propose that DASS transporters ensure substrate coupling by a charge-compensation mechanism, and by structural changes upon substrate release.

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