6WW4 image
Deposition Date 2020-05-07
Release Date 2020-08-05
Last Version Date 2023-10-18
Entry Detail
PDB ID:
6WW4
Keywords:
Title:
Crystal structure of HERC2 ZZ domain in complex with histone H3 tail
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.25 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Histone H3.1,E3 ubiquitin-protein ligase HERC2
Gene (Uniprot):HERC2, H3C1, H3C2, H3C3, H3C4, H3C6, H3C7, H3C8, H3C10, H3C11, H3C12
Chain IDs:A (auth: B), B (auth: A)
Chain Length:56
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structural Insight into Binding of the ZZ Domain of HERC2 to Histone H3 and SUMO1.
Structure 28 1225 1230.e3 (2020)
PMID: 32726574 DOI: 10.1016/j.str.2020.07.003

Abstact

Human ubiquitin ligase HERC2, a component of the DNA repair machinery, has been linked to neurological diseases and cancer. Here, we show that the ZZ domain of HERC2 (HERC2ZZ) binds to histone H3 tail and tolerates posttranslational modifications commonly present in H3. The crystal structure of the HERC2ZZ:H3 complex provides the molecular basis for this interaction and highlights a critical role of the negatively charged site of HERC2ZZ in capturing of A1 of H3. NMR, mutagenesis, and fluorescence data reveal that HERC2ZZ binds to H3 and the N-terminal tail of SUMO1, a previously reported ligand of HERC2ZZ, with comparable affinities. Like H3, the N-terminal tail of SUMO1 occupies the same negatively charged site of HERC2ZZ in the crystal structure of the complex, although in contrast to H3 it adopts an α-helical conformation. Our data suggest that HERC2ZZ may play a role in mediating the association of HERC2 with chromatin.

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