6WQL image
Entry Detail
PDB ID:
6WQL
Keywords:
Title:
Solution structure of the seed peptide C2 (VBP-1) from pumpkin
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2020-04-29
Release Date:
2020-10-21
Method Details:
Experimental Method:
Conformers Calculated:
50
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Seed peptide C2 (VBP-1)
Chain IDs:A
Chain Length:49
Number of Molecules:1
Biological Source:Cucurbita maxima
Ligand Molecules
Primary Citation
Defining the Familial Fold of the Vicilin-Buried Peptide Family.
J.Nat.Prod. 83 3030 3040 (2020)
PMID: 32997497 DOI: 10.1021/acs.jnatprod.0c00594

Abstact

Plants and their seeds have been shown to be a rich source of cystine-stabilized peptides. Recently a new family of plant seed peptides whose sequences are buried within precursors for seed storage vicilins was identified. Members of this Vicilin-Buried Peptide (VBP) family are found in distantly related plant species including the monocot date palm, as well as dicotyledonous species like pumpkin and sesame. Genetic evidence for their widespread occurrence indicates that they are of ancient origin. Limited structural studies have been conducted on VBP family members, but two members have been shown to adopt a helical hairpin fold. We present an extensive characterization of VBPs using solution NMR spectroscopy, to better understand their structural features. Four peptides were produced by solid phase peptide synthesis and shown to favor a helix-loop-helix hairpin fold, as a result of the I-IV/II-III ladderlike connectivity of their disulfide bonds. Interhelical interactions, including hydrophobic contacts and salt bridges, are critical for the fold stability and control the angle at which the antiparallel α-helices interface. Activities reported for VBPs include trypsin inhibitory activity and inhibition of ribosomal function; however, their diverse structural features despite a common fold suggest that additional bioactivities yet to be revealed are likely.

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