6WPA image
Deposition Date 2020-04-26
Release Date 2020-07-22
Last Version Date 2023-10-18
Entry Detail
PDB ID:
6WPA
Title:
Structure of AvaR1 bound to DNA half-site
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.09 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 42
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:AvaR1
Gene (Uniprot):avaR1
Chain IDs:A, B, E (auth: C), F (auth: D), G (auth: E), H (auth: F), I (auth: G), J (auth: H)
Chain Length:245
Number of Molecules:8
Biological Source:Streptomyces avermitilis
Polymer Type:polydeoxyribonucleotide
Molecule:PAL2-1-5'-GC
Chain IDs:C (auth: M), D (auth: N)
Chain Length:28
Number of Molecules:2
Biological Source:Streptomyces avermitilis MA-4680 = NBRC 14893
Ligand Molecules
Primary Citation
Biochemical basis for the regulation of biosynthesis of antiparasitics by bacterial hormones.
Elife 9 ? ? (2020)
PMID: 32510324 DOI: 10.7554/eLife.57824

Abstact

Diffusible small molecule microbial hormones drastically alter the expression profiles of antibiotics and other drugs in actinobacteria. For example, avenolide (a butenolide) regulates the production of avermectin, derivatives of which are used in the treatment of river blindness and other parasitic diseases. Butenolides and γ-butyrolactones control the production of pharmaceutically important secondary metabolites by binding to TetR family transcriptional repressors. Here, we describe a concise, 22-step synthetic strategy for the production of avenolide. We present crystal structures of the butenolide receptor AvaR1 in isolation and in complex with avenolide, as well as those of AvaR1 bound to an oligonucleotide derived from its operator. Biochemical studies guided by the co-crystal structures enable the identification of 90 new actinobacteria that may be regulated by butenolides, two of which are experimentally verified. These studies provide a foundation for understanding the regulation of microbial secondary metabolite production, which may be exploited for the discovery and production of novel medicines.

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Primary Citation of related structures