6WOQ image
Entry Detail
PDB ID:
6WOQ
Title:
Structure of Hepatitis C Virus Envelope Glycoprotein E2 core from genotype 1a bound to neutralizing antibody HC1AM and non neutralizing antibody E1
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2020-04-25
Release Date:
2020-08-19
Method Details:
Experimental Method:
Resolution:
3.67 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Fab E1 heavy chain
Chain IDs:A, F (auth: C)
Chain Length:227
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Fab E1 light chain
Chain IDs:B, G (auth: D)
Chain Length:221
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Envelope glycoprotein E2
Chain IDs:C (auth: E), H (auth: F)
Chain Length:191
Number of Molecules:2
Biological Source:Hepatitis C virus (isolate H)
Polymer Type:polypeptide(L)
Description:Fab HC1AM heavy chain
Chain IDs:D (auth: J), I (auth: G)
Chain Length:229
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Fab HC1AM light chain
Chain IDs:E (auth: K), J (auth: H)
Chain Length:215
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
An alternate conformation of HCV E2 neutralizing face as an additional vaccine target.
Sci Adv 6 eabb5642 eabb5642 (2020)
PMID: 32754640 DOI: 10.1126/sciadv.abb5642

Abstact

To achieve global elimination of hepatitis C virus (HCV), an effective cross-genotype vaccine is needed. The HCV envelope glycoprotein E2 is the main target for neutralizing antibodies (nAbs), which aid in HCV clearance and protection. E2 is structurally flexible and functions in engaging host receptors. Many nAbs bind to the "neutralizing face" on E2, including several broadly nAbs encoded by the VH1-69 germline gene family that bind to a similar conformation (A) of this face. Here, a previously unknown conformation (B) of the neutralizing face is revealed in crystal structures of two of four additional E2-VH1-69 nAb complexes. In this conformation, the E2 front-layer region is displaced upon antibody binding, exposing residues in the back layer for direct antibody interaction. This E2 B structure may represent another conformational state in the viral entry process that is susceptible to antibody neutralization and thus provide a new target for rational vaccine development.

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Primary Citation of related structures