ISDA: 6WOO

Deposition Date 2020-04-25

Release Date 2020-09-23

Last Version Date 2024-11-13

Entry Detail

PDB ID:

6WOO

Keywords:

RIBOSOME

Title:

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Biological Source:

Source Organism(s):

Saccharomyces cerevisiae (Taxon ID: 4932)

Expression System(s):

Escherichia coli

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.90 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eIF5B
Gene (Uniprot):FUN12
Chain IDs:DC (auth: 1)
Chain Length:600
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P39730 Pfam ID:PF00009, PF11987, PF14578

Polymer Type:polyribonucleotide
Molecule:18S ribosomal RNA
Chain IDs:CC (auth: 2)
Chain Length:1796
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Polymer Type:polyribonucleotide
Molecule:Met-tRNA-iMet
Chain IDs:EC (auth: 3)
Chain Length:76
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Polymer Type:polyribonucleotide
Molecule:mRNA
Chain IDs:FC (auth: 4)
Chain Length:6
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Polymer Type:polyribonucleotide
Molecule:25S ribosomal RNA
Chain IDs:A (auth: 5)
Chain Length:3271
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Polymer Type:polyribonucleotide
Molecule:5S ribosomal RNA
Chain IDs:B (auth: 7)
Chain Length:121
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Polymer Type:polyribonucleotide
Molecule:5.8S ribosomal rRNA
Chain IDs:C (auth: 8)
Chain Length:157
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uL2
Gene (Uniprot):RPL2A
Chain IDs:D (auth: A)
Chain Length:249
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX45 Pfam ID:PF00181, PF03947

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uS2
Gene (Uniprot):RPS0B
Chain IDs:VA (auth: AA)
Chain Length:206
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P46654 Pfam ID:PF00318

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uL3
Gene (Uniprot):RPL3
Chain IDs:E (auth: B)
Chain Length:384
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P14126 Pfam ID:PF00297

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eS1
Gene (Uniprot):RPS1B
Chain IDs:WA (auth: BB)
Chain Length:81
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P23248 Pfam ID:PF01015

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uL4
Gene (Uniprot):RPL4A
Chain IDs:F (auth: C)
Chain Length:97
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P10664 Pfam ID:PF00573, PF14374

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uS5
Gene (Uniprot):RPS2
Chain IDs:XA (auth: CC)
Chain Length:217
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P25443 Pfam ID:PF00333, PF03719

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uL18
Gene (Uniprot):RPL5
Chain IDs:G (auth: D)
Chain Length:295
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P26321 Pfam ID:PF17144, PF14204

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uS3
Gene (Uniprot):RPS3
Chain IDs:YA (auth: DD)
Chain Length:53
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05750 Pfam ID:PF07650, PF00189

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL6
Gene (Uniprot):RPL6A
Chain IDs:H (auth: E)
Chain Length:122
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:Q02326 Pfam ID:PF01159

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eS4
Gene (Uniprot):RPS4A
Chain IDs:ZA (auth: EE)
Chain Length:53
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX35 Pfam ID:PF08071, PF01479, PF00900, PF00467, PF16121

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uL30
Gene (Uniprot):RPL7A
Chain IDs:I (auth: F)
Chain Length:222
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05737 Pfam ID:PF08079, PF00327

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uS7
Gene (Uniprot):RPS5
Chain IDs:AB (auth: FF)
Chain Length:206
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:A0A1L4AA68 Pfam ID:PF00177

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL8
Gene (Uniprot):RPL8A
Chain IDs:J (auth: G)
Chain Length:233
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P17076 Pfam ID:PF01248

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eS6
Gene (Uniprot):RPS6A
Chain IDs:BB (auth: GG)
Chain Length:318
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX37 Pfam ID:PF01092

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uL6
Gene (Uniprot):RPL9B
Chain IDs:K (auth: H)
Chain Length:116
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P51401 Pfam ID:PF00347

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eS7
Gene (Uniprot):RPS7A
Chain IDs:CB (auth: HH)
Chain Length:184
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P26786 Pfam ID:PF01251

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uL16
Gene (Uniprot):RPL10
Chain IDs:L (auth: I)
Chain Length:216
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P41805 Pfam ID:PF00252

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eS8
Gene (Uniprot):RPS8A
Chain IDs:DB (auth: II)
Chain Length:199
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX39 Pfam ID:PF01201

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uL5
Gene (Uniprot):RPL11B
Chain IDs:M (auth: J)
Chain Length:168
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:Q3E757 Pfam ID:PF00281, PF00673

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uS4
Gene (Uniprot):RPS9B
Chain IDs:EB (auth: JJ)
Chain Length:182
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05755 Pfam ID:PF00163, PF01479

Polymer Type:polypeptide(L)
Molecule:L10
Chain IDs:UA (auth: K)
Chain Length:152
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eS10
Gene (Uniprot):RPS10A
Chain IDs:FB (auth: KK)
Chain Length:96
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:Q08745 Pfam ID:PF03501

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL13
Gene (Uniprot):RPL13A
Chain IDs:N (auth: L)
Chain Length:49
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:Q12690 Pfam ID:PF01294

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uS17
Gene (Uniprot):RPS11A
Chain IDs:GB (auth: LL)
Chain Length:145
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX47 Pfam ID:PF16205, PF00366

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL14
Gene (Uniprot):RPL14A
Chain IDs:O (auth: M)
Chain Length:51
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P36105 Pfam ID:PF00467, PF01929

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eS12
Gene (Uniprot):RPS12
Chain IDs:HB (auth: MM)
Chain Length:124
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P48589 Pfam ID:PF01248

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL15
Gene (Uniprot):RPL15A
Chain IDs:P (auth: N)
Chain Length:202
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05748 Pfam ID:PF00827

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uS15
Gene (Uniprot):RPS13
Chain IDs:IB (auth: NN)
Chain Length:150
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05756 Pfam ID:PF08069, PF00312

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uL13
Gene (Uniprot):RPL16A
Chain IDs:Q (auth: O)
Chain Length:101
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P26784 Pfam ID:PF00572

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uS11
Gene (Uniprot):RPS14B
Chain IDs:JB (auth: OO)
Chain Length:127
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P39516 Pfam ID:PF00411

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uL22
Gene (Uniprot):RPL17A
Chain IDs:R (auth: P)
Chain Length:180
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05740 Pfam ID:PF00237

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uS19
Gene (Uniprot):RPS15
Chain IDs:KB (auth: PP)
Chain Length:103
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:Q01855 Pfam ID:PF00203

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL18
Gene (Uniprot):RPL18A
Chain IDs:S (auth: Q)
Chain Length:217
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX49 Pfam ID:PF17135

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uS19
Gene (Uniprot):RPS16A
Chain IDs:LB (auth: QQ)
Chain Length:141
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX51 Pfam ID:PF00380

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL19
Gene (Uniprot):RPL19A
Chain IDs:T (auth: R)
Chain Length:195
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX82 Pfam ID:PF01280, PF25476

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eS17
Gene (Uniprot):RPS17B
Chain IDs:MB (auth: RR)
Chain Length:123
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P14127 Pfam ID:PF00833

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL20
Gene (Uniprot):RPL20A
Chain IDs:U (auth: S)
Chain Length:169
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX23 Pfam ID:PF01775

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uS13
Gene (Uniprot):RPS18A
Chain IDs:NB (auth: SS)
Chain Length:136
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX55 Pfam ID:PF00416

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL21
Gene (Uniprot):RPL21A
Chain IDs:V (auth: T)
Chain Length:158
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:Q02753 Pfam ID:PF01157

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eS19
Gene (Uniprot):RPS19A
Chain IDs:OB (auth: TT)
Chain Length:143
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P07280 Pfam ID:PF01090

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL22
Gene (Uniprot):RPL22A
Chain IDs:W (auth: U)
Chain Length:100
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05749 Pfam ID:PF01776

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uS10
Gene (Uniprot):RPS20
Chain IDs:PB (auth: UU)
Chain Length:106
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P38701 Pfam ID:PF00338

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uL14
Gene (Uniprot):RPL23A
Chain IDs:X (auth: V)
Chain Length:132
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX41 Pfam ID:PF00238

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eS21
Gene (Uniprot):RPS21A
Chain IDs:QB (auth: VV)
Chain Length:87
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0C0V8 Pfam ID:PF01249

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL24
Gene (Uniprot):RPL24A
Chain IDs:Y (auth: W)
Chain Length:62
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P04449 Pfam ID:PF01246

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uS8
Gene (Uniprot):RPS22A
Chain IDs:RB (auth: WW)
Chain Length:129
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0C0W1 Pfam ID:PF00410

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uL23
Gene (Uniprot):RPL25
Chain IDs:Z (auth: X)
Chain Length:121
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P04456 Pfam ID:PF03939, PF00276

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uS12
Gene (Uniprot):RPS23A
Chain IDs:SB (auth: XX)
Chain Length:144
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX29 Pfam ID:PF00164

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uL24
Gene (Uniprot):RPL26A
Chain IDs:AA (auth: Y)
Chain Length:125
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05743 Pfam ID:PF16906, PF00467

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eS24
Gene (Uniprot):RPS24A
Chain IDs:TB (auth: YY)
Chain Length:134
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX31 Pfam ID:PF01282

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL27
Gene (Uniprot):RPL27A
Chain IDs:BA (auth: Z)
Chain Length:134
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0C2H6 Pfam ID:PF01777

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eS25
Gene (Uniprot):RPS25A
Chain IDs:UB (auth: ZZ)
Chain Length:70
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:Q3E792 Pfam ID:PF03297

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uL15
Gene (Uniprot):RPL28
Chain IDs:CA (auth: a)
Chain Length:249
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P02406 Pfam ID:PF00828

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eS26
Gene (Uniprot):RPS26B
Chain IDs:VB (auth: aa)
Chain Length:206
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P39939 Pfam ID:PF01283

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL29
Gene (Uniprot):RPL29
Chain IDs:DA (auth: b)
Chain Length:384
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05747 Pfam ID:PF01779

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eS27
Gene (Uniprot):RPS27A
Chain IDs:WB (auth: bb)
Chain Length:81
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P35997 Pfam ID:PF01667

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL30
Gene (Uniprot):RPL30
Chain IDs:EA (auth: c)
Chain Length:97
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P14120 Pfam ID:PF01248

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eS28
Gene (Uniprot):RPS28A
Chain IDs:XB (auth: cc)
Chain Length:217
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:Q3E7X9 Pfam ID:PF01200

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL31
Gene (Uniprot):RPL31A
Chain IDs:FA (auth: d)
Chain Length:295
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0C2H8 Pfam ID:PF01198

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uS14
Gene (Uniprot):RPS29A
Chain IDs:YB (auth: dd)
Chain Length:53
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P41057 Pfam ID:PF00253

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL32
Gene (Uniprot):RPL32
Chain IDs:GA (auth: e)
Chain Length:122
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P38061 Pfam ID:PF01655

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eS30
Gene (Uniprot):RPS30A
Chain IDs:ZB (auth: ee)
Chain Length:53
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX33 Pfam ID:PF04758

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL33
Gene (Uniprot):RPL33A
Chain IDs:HA (auth: f)
Chain Length:222
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05744 Pfam ID:PF01247

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eS31
Gene (Uniprot):RPS31
Chain IDs:AC (auth: ff)
Chain Length:206
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05759 Pfam ID:PF01599

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL34
Gene (Uniprot):RPL34A
Chain IDs:IA (auth: g)
Chain Length:233
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P87262 Pfam ID:PF01199

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RACK1
Gene (Uniprot):ASC1
Chain IDs:BC (auth: gg)
Chain Length:318
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P38011 Pfam ID:PF00400

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uL29
Gene (Uniprot):RPL35A
Chain IDs:JA (auth: h)
Chain Length:116
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX84 Pfam ID:PF00831

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL36
Gene (Uniprot):RPL36A
Chain IDs:KA (auth: i)
Chain Length:216
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05745 Pfam ID:PF01158

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL37
Gene (Uniprot):RPL37A
Chain IDs:LA (auth: j)
Chain Length:168
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P49166 Pfam ID:PF01907

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL38
Gene (Uniprot):RPL38
Chain IDs:MA (auth: k)
Chain Length:152
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P49167 Pfam ID:PF01781

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL39
Gene (Uniprot):RPL39
Chain IDs:NA (auth: l)
Chain Length:49
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P04650 Pfam ID:PF00832

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL40
Gene (Uniprot):RPL40A
Chain IDs:OA (auth: m)
Chain Length:51
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CH08 Pfam ID:PF01020

Polymer Type:polypeptide(L)
Molecule:eL41
Chain IDs:PA (auth: n)
Chain Length:202
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL42
Gene (Uniprot):RPL42A
Chain IDs:QA (auth: o)
Chain Length:101
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX27 Pfam ID:PF00935

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL43
Gene (Uniprot):RPL43A
Chain IDs:RA (auth: p)
Chain Length:180
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX25 Pfam ID:PF01780

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uL1
Gene (Uniprot):RPL1A
Chain IDs:SA (auth: q)
Chain Length:217
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX43 Pfam ID:PF00687

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uL10
Gene (Uniprot):RPP0
Chain IDs:TA (auth: r)
Chain Length:195
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05317 Pfam ID:PF00466, PF17777

Ligand Molecules

GDP

MET

U6A

Primary Citation

Structural basis for the transition from translation initiation to elongation by an 80S-eIF5B complex.

Wang, J, Wang, J, Shin, B.S, Kim, J.R, Dever, T.E, Puglisi, J.D, Fernandez, I.S.Show

Nat Commun 11 5003 5003 (2020)

PMID: 33024099 DOI: 10.1038/s41467-020-18829-3

Abstact

Recognition of a start codon by the initiator aminoacyl-tRNA determines the reading frame of messenger RNA (mRNA) translation by the ribosome. In eukaryotes, the GTPase eIF5B collaborates in the correct positioning of the initiator Met-tRNAiMet on the ribosome in the later stages of translation initiation, gating entrance into elongation. Leveraging the long residence time of eIF5B on the ribosome recently identified by single-molecule fluorescence measurements, we determine the cryoEM structure of the naturally long-lived ribosome complex with eIF5B and Met-tRNAiMet immediately before transition into elongation. The structure uncovers an unexpected, eukaryotic specific and dynamic fidelity checkpoint implemented by eIF5B in concert with components of the large ribosomal subunit.

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Protein

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Primary Citation of related structures

Abstact

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