6WOK image
Entry Detail
PDB ID:
6WOK
Keywords:
Title:
Crystal structure of estrogen receptor alpha in complex with receptor degrader 6
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2020-04-24
Release Date:
2020-07-01
Method Details:
Experimental Method:
Resolution:
2.31 Å
R-Value Free:
0.25
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Estrogen receptor
Mutations:L372S,L536S
Chain IDs:A (auth: D), B (auth: A), C, D (auth: B)
Chain Length:280
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Discovery of GNE-149 as a Full Antagonist and Efficient Degrader of Estrogen Receptor alpha for ER+ Breast Cancer.
Acs Med.Chem.Lett. 11 1342 1347 (2020)
PMID: 32551022 DOI: 10.1021/acsmedchemlett.0c00224

Abstact

Estrogen receptor alpha (ERα) is a well-validated drug target for ER-positive (ER+) breast cancer. Fulvestrant is FDA-approved to treat ER+ breast cancer and works through two mechanisms-as a full antagonist and selective estrogen receptor degrader (SERD)-but lacks oral bioavailability. Thus, we envisioned a "best-in-class" molecule with the same dual mechanisms as fulvestrant, but with significant oral exposure. Through lead optimization, we discovered a tool molecule 12 (GNE-149) with improved degradation and antiproliferative activity in both MCF7 and T47D cells. To illustrate the binding mode and key interactions of this scaffold with ERα, we obtained a cocrystal structure of 6 that showed ionic interaction of azetidine with Asp351 residue. Importantly, 12 showed favorable metabolic stability and good oral exposure. 12 exhibited antagonist effect in the uterus and demonstrated robust dose-dependent efficacy in xenograft models.

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