6WMU image
Entry Detail
PDB ID:
6WMU
EMDB ID:
Keywords:
Title:
E. coli RNAPs70-SspA-gadA DNA complex
Biological Source:
PDB Version:
Deposition Date:
2020-04-21
Release Date:
2020-11-11
Method Details:
Experimental Method:
Resolution:
3.18 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase subunit alpha
Chain IDs:A, B
Chain Length:329
Number of Molecules:2
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase subunit beta
Chain IDs:C
Chain Length:1342
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase subunit beta'
Chain IDs:D
Chain Length:1430
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase subunit omega
Chain IDs:E
Chain Length:91
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:RNA polymerase sigma factor RpoD
Chain IDs:F
Chain Length:613
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polydeoxyribonucleotide
Description:DNA NT-strand
Chain IDs:G
Chain Length:37
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polydeoxyribonucleotide
Description:DNA T-strand
Chain IDs:H
Chain Length:27
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polydeoxyribonucleotide
Description:DNA NT-strand downstream
Chain IDs:I
Chain Length:11
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polydeoxyribonucleotide
Description:DNA T-strand downstream
Chain IDs:J
Chain Length:11
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:Stringent starvation protein A
Chain IDs:K, L
Chain Length:232
Number of Molecules:2
Biological Source:Escherichia coli TA054
Primary Citation
Structural Basis for Virulence Activation of Francisella tularensis.
Mol.Cell 81 139 ? (2021)
PMID: 33217319 DOI: 10.1016/j.molcel.2020.10.035

Abstact

The bacterium Francisella tularensis (Ft) is one of the most infectious agents known. Ft virulence is controlled by a unique combination of transcription regulators: the MglA-SspA heterodimer, PigR, and the stress signal, ppGpp. MglA-SspA assembles with the σ70-associated RNAP holoenzyme (RNAPσ70), forming a virulence-specialized polymerase. These factors activate Francisella pathogenicity island (FPI) gene expression, which is required for virulence, but the mechanism is unknown. Here we report FtRNAPσ70-promoter-DNA, FtRNAPσ70-(MglA-SspA)-promoter DNA, and FtRNAPσ70-(MglA-SspA)-ppGpp-PigR-promoter DNA cryo-EM structures. Structural and genetic analyses show MglA-SspA facilitates σ70 binding to DNA to regulate virulence and virulence-enhancing genes. Our Escherichia coli RNAPσ70-homodimeric EcSspA structure suggests this is a general SspA-transcription regulation mechanism. Strikingly, our FtRNAPσ70-(MglA-SspA)-ppGpp-PigR-DNA structure reveals ppGpp binding to MglA-SspA tethers PigR to promoters. PigR in turn recruits FtRNAP αCTDs to DNA UP elements. Thus, these studies unveil a unique mechanism for Ft pathogenesis involving a virulence-specialized RNAP that employs two (MglA-SspA)-based strategies to activate virulence genes.

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Primary Citation of related structures